RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZNF19P17023 458 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 GTF2E2P29084 291 aaKnown RBP12.83□□□□□ -0.36
LIG3-205ENST00000585941 GRPRP30550 384 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 ETV6P41212 452 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 GBX2P52951 348 aaPredicted RBP12.83□□□□□ -0.36
LIG3-205ENST00000585941 BLVRAP53004 296 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 RPL27P61353 136 aaKnown RBP12.83□□□□□ -0.36
LIG3-205ENST00000585941 ZP4Q12836 540 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 SF3A2Q15428 464 aaKnown RBP12.83□□□□□ -0.36
LIG3-205ENST00000585941 CDONQ4KMG0 1287 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 C1QL3Q5VWW1 255 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 MS4A15Q8N5U1 240 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 ZFP41Q8N8Y5 198 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 ASB15Q8WXK1 588 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 AP3S1Q92572 193 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 C4orf36Q96KX1 117 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 FRMD6Q96NE9 622 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 TMED9Q9BVK6 235 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 TXNIPQ9H3M7 391 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 PISDQ9UG56 409 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 ZNF346Q9UL40 294 aaKnown RBP12.83□□□□□ -0.36
LIG3-205ENST00000585941 TCFL5Q9UL49 500 aa12.83□□□□□ -0.36
LIG3-205ENST00000585941 GPR179Q6PRD1 2367 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 C2orf72A6NCS6 295 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 NPIPB13A6NJU9 1138 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 NPIPB4C9JG80 1138 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 GABRPO00591 440 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 PLPP3O14495 311 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 SERPINI2O75830 405 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 TFP02787 698 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 CD1AP06126 327 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 EIF1P41567 113 aaKnown RBP12.82□□□□□ -0.36
LIG3-205ENST00000585941 SSR4P51571 173 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 RPS15P62841 145 aaKnown RBP12.82□□□□□ -0.36
LIG3-205ENST00000585941 SSPNQ14714 243 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 PLPPR5Q32ZL2 321 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 CCDC58Q4VC31 144 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 CCDC157Q569K6 752 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 MESTQ5EB52 335 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 SPANXN2Q5MJ10 180 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 LINC01590Q5TEZ4 76 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 SLC16A9Q7RTY1 509 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 KCTD20Q7Z5Y7 419 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 OR2M3Q8NG83 312 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 SNX33Q8WV41 574 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 SMURF1Q9HCE7 757 aa12.82□□□□□ -0.36
LIG3-205ENST00000585941 A0A087WZY1 265 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 A0A1W2PRG6 482 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 A6NIZ1 184 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FZD7O75084 574 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FRYLO94915 3013 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 HPP00738 406 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 SERPINA3P01011 423 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 TCN2P20062 427 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 CFL1P23528 166 aaKnown RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 ADH6P28332 368 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 SDC2P34741 201 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 NAA10P41227 235 aaPredicted RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 RAP1BP61224 184 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 RAP1AP62834 184 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FOXF1Q12946 379 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 MRPL28Q13084 256 aaKnown RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 RGS21Q2M5E4 152 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 EEF1A1P5Q5VTE0 462 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FAM205BPQ63HN1 556 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 VASNQ6EMK4 673 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 ARSKQ6UWY0 536 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 RPS19BP1Q86WX3 136 aaKnown RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 MARCH9Q86YJ5 346 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 ESX1Q8N693 406 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FADS6Q8N9I5 356 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 OR4K17Q8NGC6 315 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 OR51L1Q8NGJ5 315 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 ZPLD1Q8TCW7 415 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 CT55Q8WUE5 264 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 SLC25A43Q8WUT9 341 aaPredicted RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 THAP4Q8WY91 577 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 NXPE2Q96DL1 559 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 CEP19Q96LK0 163 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 BARHL1Q9BZE3 327 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 SPRY4Q9C004 299 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 OR11A1Q9GZK7 315 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 OCEL1Q9H607 264 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 ZMIZ1Q9ULJ6 1067 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 VDAC3Q9Y277 283 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 FARSAQ9Y285 508 aaKnown RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 FKBP7Q9Y680 259 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 CHCHD2Q9Y6H1 151 aaPredicted RBP12.81□□□□□ -0.36
LIG3-205ENST00000585941 MUC3AQ02505 3323 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 TTC28Q96AY4 2481 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 CPAMD8Q8IZJ3 1885 aa12.81□□□□□ -0.36
LIG3-205ENST00000585941 C11orf98E9PRG8 122 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 OGG1O15527 345 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 ARHGEF9O43307 516 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 MT-CO3P00414 261 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 TACSTD2P09758 323 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 AHCYP23526 432 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 PYCR1P32322 319 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 OR12D2P58182 307 aa12.8□□□□□ -0.36
LIG3-205ENST00000585941 MLF1P58340 268 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms