RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 UBQLNLQ8IYU4 475 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 ENTHD1Q8IYW4 607 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 MRPL43Q8N983 215 aaKnown RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 UXS1Q8NBZ7 420 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 OR4K2Q8NGD2 314 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 OR6F1Q8NGZ6 308 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 LILRB4Q8NHJ6 448 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 C9orf43Q8TAL5 461 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 CNIH3Q8TBE1 160 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 BLOC1S5Q8TDH9 187 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 APH1BQ8WW43 257 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 PROX1Q92786 737 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 GGHQ92820 318 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 ST6GALNAC6Q969X2 333 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 ESAMQ96AP7 390 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 CMTM7Q96FZ5 175 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 RBM18Q96H35 190 aaKnown RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 C7orf34Q96L11 122 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF582Q96NG8 517 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 COL21A1Q96P44 957 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 AGAP4Q96P64 663 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 MS4A10Q96PG2 267 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 TRAF4Q9BUZ4 470 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 CCDC32Q9BV29 185 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 GABARAPL3Q9BY60 117 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 CCDC90BQ9GZT6 254 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 RACGAP1Q9H0H5 632 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 DCSTAMPQ9H295 470 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 IKZF5Q9H5V7 419 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 SLA2Q9H6Q3 261 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 AKIRIN1Q9H9L7 192 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 C3orf14Q9HBI5 128 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 LRTM1Q9HBL6 345 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 NEK6Q9HC98 313 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 TMEM161AQ9NX61 479 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 RNF186Q9NXI6 227 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 FBXL12Q9NXK8 326 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 IL17CQ9P0M4 197 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 SPASTQ9UBP0 616 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 TP53TG3Q9ULZ0 132 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 GINS2Q9Y248 185 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 N6AMT1Q9Y5N5 214 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 GMPPBQ9Y5P6 360 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 MIA3Q5JRA6 1907 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 PATJQ8NI35 1801 aa3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 TNRC18O15417 2968 aaPredicted RBP3.42□□□□□ -1.86
SMCHD1-208ENST00000583344 NLRC5Q86WI3 1866 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KCNE1BA0A087WTH5 132 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TRBV5-4A0A0C4DH59 114 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TMEM8BA6NDV4 472 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 LOC730098B7Z3J9 87 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TRIM77I1YAP6 450 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KMOO15229 486 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 MPZL2O60487 215 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 NIPSNAP2O75323 286 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 B3GAT3O94766 335 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SEMA3DO95025 777 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PGLSO95336 258 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CLDN9O95484 217 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KRT75O95678 551 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 LGI1O95970 557 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 MOCS2O96007 188 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KRT6AP02538 564 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 APOA1P02647 267 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 C9P02748 559 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KRT6BP04259 564 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FABP3P05413 133 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 H1F0P07305 194 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SPNP16150 400 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF7P17097 686 aaPredicted RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PRPS1L1P21108 318 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PPIBP23284 216 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 PSMB9P28065 219 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 OR1E1P30953 314 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FMO3P31513 532 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 S100A5P33763 92 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 HMGCLP35914 325 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 BRCC3P46736 316 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 KRT6CP48668 564 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 RGS6P49758 472 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 RGS4P49798 205 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CDH4P55283 916 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 DEFA1P59665 94 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 DEFA3P59666 94 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 NCS1P62166 190 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 MRPS6P82932 125 aaKnown RBP3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CACNG1Q06432 222 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 LGALS3BPQ08380 585 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 MGAT3Q09327 533 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 LRRC74AQ0VAA2 488 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GPR50Q13585 617 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 ZNF235Q14590 738 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 NCF4Q15080 339 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 CDK10Q15131 360 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 FAM174BQ3ZCQ3 159 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 GPR33Q49SQ1 333 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 SPANXN4Q5MJ08 99 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 DCAF10Q5QP82 559 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 TPRG1LQ5T0D9 272 aa3.41□□□□□ -1.86
SMCHD1-208ENST00000583344 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms