RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IKZF2Q9UKS7 526 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS53-219ENST00000576019 TCF19Q9Y242 345 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 DMRT1Q9Y5R6 373 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 SELENOKQ9Y6D0 94 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 OBSL1O75147 1896 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 ANK3Q12955 4377 aaKnown RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 MYH7P12883 1935 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 A0A1W2PNV4 684 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 A0A1W2PPE3 182 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 CD8B2A6NJW9 211 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 NPIPA7E9PJI5 369 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 K7EM74 188 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 K7ERI5 159 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 P2RY10O00398 339 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 PRKAB2O43741 272 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 E2F6O75461 281 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 SEC24AO95486 1093 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 NGFP01138 241 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 RPLP0P05388 317 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 SP1P08047 785 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 NPIPA8P0DM63 369 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 MSR1P21757 451 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 CD1CP29017 333 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 RPL13AP40429 203 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 QARSP47897 775 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 GAGE5Q13069 117 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 GAGE6Q13070 117 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 SNTA1Q13424 505 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 ART3Q13508 389 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 KIF26BQ2KJY2 2108 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 ZNF829Q3KNS6 432 aaPredicted RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 UNC50Q53HI1 259 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 OTUD3Q5T2D3 398 aaPredicted RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 GCNT7Q6ZNI0 430 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 STOX1Q6ZVD7 989 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 KCNMB4Q86W47 210 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 RNF130Q86XS8 419 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 MICU2Q8IYU8 434 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 SYCE1Q8N0S2 351 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 LKAAEAR1Q8TD35 194 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 MAIP1Q8WWC4 291 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 OR1E3Q8WZA6 343 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 SDSLQ96GA7 329 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 ATXN7L3BQ96GX2 97 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 C20orf173Q96LM9 149 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 LRRC1Q9BTT6 524 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 ZNF747Q9BV97 191 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 PLEKHA3Q9HB20 300 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 C20orf96Q9NUD7 363 aaPredicted RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 ARMCX1Q9P291 453 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 EIF3KQ9UBQ5 218 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 NPIPA1Q9UND3 350 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 STARD10Q9Y365 291 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 EXOSC1Q9Y3B2 195 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 GMEB1Q9Y692 573 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 BZW2Q9Y6E2 419 aaKnown RBP4.89□□□□□ -1.63
VPS53-219ENST00000576019 CKAP5Q14008 2032 aa4.89□□□□□ -1.63
VPS53-219ENST00000576019 A0A0A6YYD4 124 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 OR6C74A6NCV1 312 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 KRTAP9-7A8MTY7 169 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 C12orf71A8MTZ7 269 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 NEDD8-MDP1E9PL57 170 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 PSMD11O00231 422 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 BCKDKO14874 412 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 MSH4O15457 936 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TAPBPO15533 448 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 RS1O15537 224 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 RAMP3O60896 148 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 OR2J3O76001 311 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TSHBP01222 138 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 CLTAP09496 248 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 IGHV4-38-2P0DP08 117 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 CCNB1P14635 433 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 GSTM3P21266 225 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 CDH5P33151 784 aaPredicted RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 HLCSP50747 726 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 IST1P53990 364 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ELLP55199 621 aaPredicted RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 XGP55808 180 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 PEX3P56589 373 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TUBA1BP68363 451 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TRAF2Q12933 501 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 CRMP1Q14194 572 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TWF2Q6IBS0 349 aaKnown RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 RHBDD2Q6NTF9 364 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 DEGS2Q6QHC5 323 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ATRAIDQ6UW56 229 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 SSX9Q7RTT3 188 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 HSD11B1LQ7Z5J1 315 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 TSEN54Q7Z6J9 526 aaKnown RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 VRK2Q86Y07 508 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 SLC35F2Q8IXU6 374 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 SLC22A15Q8IZD6 547 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 FAM9CQ8IZT9 166 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 GABRG1Q8N1C3 465 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ASCC1Q8N9N2 400 aaKnown RBP4.88□□□□□ -1.63
VPS53-219ENST00000576019 ASZ1Q8WWH4 475 aa4.88□□□□□ -1.63
VPS53-219ENST00000576019 ELOVL6Q9H5J4 265 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms