RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CH25HO95992 272 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 ASAH2BP0C7U1 165 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 NQO1P15559 274 aaKnown RBP18.29■□□□□ 0.52
VPS53-210ENST00000571456 BMP5P22003 454 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 RRM2P31350 389 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 ASCL1P50553 236 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 P2RY4P51582 365 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 ZP4Q12836 540 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 FOXF2Q12947 444 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 PMS2P3Q13401 168 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 NCCRP1Q6ZVX7 275 aaPredicted RBP18.29■□□□□ 0.52
VPS53-210ENST00000571456 TMPRSS11FQ6ZWK6 438 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 NRMQ8IXM6 262 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 ZNF417Q8TAU3 575 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 TMEM45BQ96B21 275 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 ZNF587Q96SQ5 575 aaPredicted RBP18.29■□□□□ 0.52
VPS53-210ENST00000571456 NDEL1Q9GZM8 345 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 REEP1Q9H902 201 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 JKAMPQ9P055 326 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 TESMINQ9Y4I5 508 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 NOX1Q9Y5S8 564 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 COL6A5A8TX70 2615 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 OR6C65A6NJZ3 312 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 KPNA4O00629 521 aaPredicted RBP18.28■□□□□ 0.52
VPS53-210ENST00000571456 IFI30P13284 250 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 ZNF43P17038 809 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 FUT1P19526 365 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 LTBQ06643 244 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 PUDPQ08623 228 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 PODNL1Q6PEZ8 512 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 NANOGNBQ7Z5D8 188 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 PXKQ7Z7A4 578 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 P3H2Q8IVL5 708 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 CCDC103Q8IW40 242 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 TUSC5Q8IXB3 177 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 OR9K2Q8NGE7 335 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 UTP4Q969X6 686 aaKnown RBP18.28■□□□□ 0.52
VPS53-210ENST00000571456 STARD4Q96DR4 205 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 MOGAT1Q96PD6 335 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 ALPK1Q96QP1 1244 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 FUZQ9BT04 418 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 ING1Q9UK53 422 aaPredicted RBP18.28■□□□□ 0.52
VPS53-210ENST00000571456 FLVCR1Q9Y5Y0 555 aa18.28■□□□□ 0.52
VPS53-210ENST00000571456 SH3PXD2BA1X283 911 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 FKBP6O75344 327 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 DIRAS1O95057 198 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 CST1P01037 141 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 FCGR1AP12314 374 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 ACTR3P61158 418 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 PLXDC2Q6UX71 529 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 BEND4Q6ZU67 534 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 SLC46A3Q7Z3Q1 461 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 GPAT4Q86UL3 456 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 ANKK1Q8NFD2 765 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 DNAJA3Q96EY1 480 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 REPIN1Q9BWE0 567 aaKnown RBP18.27■□□□□ 0.52
VPS53-210ENST00000571456 CXXC4Q9H2H0 198 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 ARMC1Q9NVT9 282 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 ELOVL5Q9NYP7 299 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 RCE1Q9Y256 329 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 NOSIPQ9Y314 301 aaKnown RBP18.27■□□□□ 0.52
VPS53-210ENST00000571456 LYVE1Q9Y5Y7 322 aa18.27■□□□□ 0.52
VPS53-210ENST00000571456 ZNF814B7Z6K7 855 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 TNFRSF11BO00300 401 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 PLPP3O14495 311 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 MRPL33O75394 65 aaKnown RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 DEAF1O75398 565 aaPredicted RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 CGAP01215 116 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 TSPAN19P0C672 248 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 DNAJA1P31689 397 aaKnown RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 LIMS1P48059 325 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 C1DQ13901 141 aaKnown RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 HDDC2Q7Z4H3 204 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 UEVLDQ8IX04 471 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 RELL2Q8NC24 303 aaPredicted RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 OR4K5Q8NGD3 323 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 PFN4Q8NHR9 129 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 FOXC2Q99958 501 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 SLC24A3Q9HC58 644 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 C20orf141Q9NUB4 165 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 STX18Q9P2W9 335 aaKnown RBP18.26■□□□□ 0.51
VPS53-210ENST00000571456 DNAJB9Q9UBS3 223 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 STAB1Q9NY15 2570 aa18.26■□□□□ 0.51
VPS53-210ENST00000571456 TRBV4-1A0A0J9YWV2 114 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 A8MXE2 369 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 EFCAB9A8MZ26 197 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 GNGT2O14610 69 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 ADORA3P0DMS8 318 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 SAGP10523 405 aaPredicted RBP18.25■□□□□ 0.51
VPS53-210ENST00000571456 OR3A2P47893 321 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 IST1P53990 364 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 PRPS1P60891 318 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 SIRPAP78324 504 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 ZFP1Q6P2D0 407 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 VWA1Q6PCB0 445 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 CREB3L2Q70SY1 520 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 BTLAQ7Z6A9 289 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 LIX1LQ8IVB5 337 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 OR52J3Q8NH60 311 aa18.25■□□□□ 0.51
VPS53-210ENST00000571456 APH1AQ96BI3 265 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms