RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ARF3P61204 181 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 MRPS10P82664 201 aaKnown RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 ARF1P84077 181 aaKnown RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 HOXC5Q00444 222 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CDK6Q00534 326 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MS4A2Q01362 244 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CFHR3Q02985 330 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 EMX1Q04741 257 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 CHRNB3Q05901 458 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PDZK1IP1Q13113 114 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PTPRCAPQ14761 206 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OPCMLQ14982 345 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SF3A2Q15428 464 aaKnown RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 SHHQ15465 462 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR4D1Q15615 310 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF79Q15937 498 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RPE65Q16518 533 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SMIM21Q3B7S5 101 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 LGALSLQ3ZCW2 172 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 SCGB2B2Q4G0G5 96 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CTXN3Q4LDR2 81 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RFTN2Q52LD8 501 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 NKAIN2Q5VXU1 208 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SAXO2Q658L1 398 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 NCR3LG1Q68D85 454 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3CQ6IPX1 549 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 LRRC8EQ6NSJ5 796 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TRAT1Q6PIZ9 186 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KLHL17Q6TDP4 642 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 LCLAT1Q6UWP7 414 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MFSD7Q6UXD7 560 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 FAM151BQ6UXP7 276 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 LANCL3Q6ZV70 420 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MOB2Q70IA6 237 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 FCRLAQ7L513 359 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MRPL21Q7Z2W9 205 aaKnown RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 ANKRD33Q7Z3H0 272 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TECPR1Q7Z6L1 1165 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 AQP12AQ8IXF9 295 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 NRMQ8IXM6 262 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KATNAL2Q8IYT4 538 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TBC1D3Q8IZP1 549 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 ZNF444Q8N0Y2 327 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 MMP21Q8N119 569 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 DAW1Q8N136 415 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 COMMD1Q8N668 190 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PNPLA1Q8N8W4 532 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CCDC71LQ8N9Z2 235 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CYB561A3Q8NBI2 242 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 UBAC2Q8NBM4 344 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TMEM161BQ8NDZ6 487 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 DBF4BQ8NFT6 615 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR11H4Q8NGC9 324 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR5B17Q8NGF7 314 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR8J1Q8NGP2 316 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR2G2Q8NGZ5 317 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TERB2Q8NHR7 220 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SPPL2BQ8TCT7 592 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ABHD5Q8WTS1 349 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 FAM222BQ8WU58 562 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 GLMPQ8WWB7 406 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 C1orf54Q8WWF1 131 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KCNE4Q8WWG9 221 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CACNG8Q8WXS5 425 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 HIST1H2BAQ96A08 127 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 TADA1Q96BN2 335 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 UPRTQ96BW1 309 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RASD2Q96D21 266 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ORAI1Q96D31 301 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 LGALS12Q96DT0 336 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CPNE2Q96FN4 548 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 OTUB1Q96FW1 271 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 P2RY11Q96G91 374 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CENPNQ96H22 339 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 PPP1R16AQ96I34 528 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MS4A4EQ96PG1 132 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 OR8B4Q96RC9 309 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ACOX2Q99424 681 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PKMYT1Q99640 499 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 CMKLR1Q99788 373 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 KLHDC3Q9BQ90 382 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PIGQQ9BRB3 760 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SLC35A5Q9BS91 424 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 MARVELD1Q9BSK0 173 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 ALKBH7Q9BT30 221 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 BARHL1Q9BZE3 327 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PKIBQ9C010 78 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PRSS22Q9GZN4 317 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 SPRTNQ9H040 489 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 TMEM117Q9H0C3 514 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 VCX2Q9H322 139 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 PRO1933Q9H354 126 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 DPEP2Q9H4A9 486 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RGCCQ9H4X1 137 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 WDR55Q9H6Y2 383 aaPredicted RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 MMP25Q9NPA2 562 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 FZD3Q9NPG1 666 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 RBFOX1Q9NWB1 397 aaKnown RBP2.96□□□□□ -1.94
VPS35-208ENST00000568612 DDIT4Q9NX09 232 aa2.96□□□□□ -1.94
VPS35-208ENST00000568612 GAR1Q9NY12 217 aaKnown RBP2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms