RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PFN4Q8NHR9 129 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 SGTBQ96EQ0 304 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 C18orf12Q96KH6 178 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 ZNF426Q9BUY5 554 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 GALNT8Q9NY28 637 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 ING1Q9UK53 422 aaPredicted RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 LRRN3E7EW58 273 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 DIRAS1O95057 198 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 ZNF43P17038 809 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 SMIM11AP58511 58 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 SPIBQ01892 262 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 CHRNB3Q05901 458 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 FLOT2Q14254 428 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 SLC17A1Q14916 467 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 ZNF74Q16587 644 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 FAM98BQ52LJ0 330 aaKnown RBP15.28■□□□□ 0.04
CLN3-217ENST00000565354 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.28■□□□□ 0.04
CLN3-217ENST00000565354 CDK20Q8IZL9 346 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 UBE2J2Q8N2K1 259 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 KDM8Q8N371 416 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 PIK3C3Q8NEB9 887 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 OR5J2Q8NH18 312 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 APH1AQ96BI3 265 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 C7orf34Q96L11 122 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 MOGAT1Q96PD6 335 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 PIP5K1AQ99755 562 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 CADM1Q9BY67 442 aaKnown RBP15.28■□□□□ 0.04
CLN3-217ENST00000565354 FKRPQ9H9S5 495 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 NMNAT1Q9HAN9 279 aaPredicted RBP15.28■□□□□ 0.04
CLN3-217ENST00000565354 PARPBPQ9NWS1 579 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 ELOVL5Q9NYP7 299 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 NDUFAF4Q9P032 175 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 SEC14L4Q9UDX3 406 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 TESMINQ9Y4I5 508 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 FLVCR1Q9Y5Y0 555 aa15.28■□□□□ 0.04
CLN3-217ENST00000565354 FFAR1O14842 300 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 AKAP8O43823 692 aaKnown RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 RAF1P04049 648 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 INHBBP09529 407 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 ADORA3P0DMS8 318 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 IFI30P13284 250 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 AHCYP23526 432 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 CD79BP40259 229 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 OR3A2P47893 321 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 DEFB113Q30KQ7 82 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 ZNF474Q6S9Z5 364 aaPredicted RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 TFAP2EQ6VUC0 442 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 AAED1Q7RTV5 226 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 NANOGNBQ7Z5D8 188 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 SPATA24Q86W54 205 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 UEVLDQ8IX04 471 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 ADPRHL1Q8NDY3 354 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 ACOT11Q8WXI4 607 aaPredicted RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 OXGR1Q96P68 337 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 ZNF347Q96SE7 839 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 MMADHCQ9H3L0 296 aaPredicted RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 ANKRD19PQ9H560 264 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 MAGIXQ9H6Y5 334 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 KRCC1Q9NPI7 259 aaPredicted RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 MEPEQ9NQ76 525 aaPredicted RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 MRPL39Q9NYK5 338 aaKnown RBP15.27■□□□□ 0.04
CLN3-217ENST00000565354 ZNF229Q9UJW7 825 aa15.27■□□□□ 0.04
CLN3-217ENST00000565354 TCRBV5S2A0A599 114 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 C11orf98E9PRG8 122 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 PIP5K1CO60331 668 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 SERPINI2O75830 405 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 OR7A10O76100 309 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 PRSS23O95084 383 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 GADD45GO95257 159 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 SEMG1P04279 462 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 P2RY4P51582 365 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 PUDPQ08623 228 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 POU4F3Q15319 338 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 PGM2L1Q6PCE3 622 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 CLEC9AQ6UXN8 241 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 NRMQ8IXM6 262 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 RNF113BQ8IZP6 322 aaKnown RBP15.26■□□□□ 0.03
CLN3-217ENST00000565354 OR52J3Q8NH60 311 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 FAM222BQ8WU58 562 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 LRMDAQ9H2I8 198 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 IL1RAPQ9NPH3 570 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 MAN2C1Q9NTJ4 1040 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 UPB1Q9UBR1 384 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 PRSS50Q9UI38 385 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 AURKCQ9UQB9 309 aa15.26■□□□□ 0.03
CLN3-217ENST00000565354 ATRQ13535 2644 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 HTR3EA5X5Y0 456 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 AQP12BA6NM10 295 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 BLOC1S5-TXNDC5H3BN57 136 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 ACOT8O14734 319 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 RNF13O43567 381 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 FZD7O75084 574 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 KRT33AO76009 404 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 ATE1O95260 518 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 IGF2P01344 180 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 SAGP10523 405 aaPredicted RBP15.25■□□□□ 0.03
CLN3-217ENST00000565354 FUT1P19526 365 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 HOXC12P31275 282 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 RRM2P31350 389 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 CLDN17P56750 224 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms