RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 VOPP1Q96AW1 172 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 SLX1AQ9BQ83 275 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 NUP50Q9UKX7 468 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 A0A1W2PPL8 197 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 C4orf47A7E2U8 309 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 CHP2O43745 196 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 EPPINO95925 133 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 PLATP00750 562 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 CD1CP29017 333 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 UBE2MP61081 183 aaKnown RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 KLHL24Q6TFL4 600 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 PM20D2Q8IYS1 436 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 SDR16C5Q8N3Y7 309 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 ATF6BQ99941 703 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 AUNIPQ9H7T9 357 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 ARRDC5A6NEK1 342 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 APOC3P02656 99 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 TFP02787 698 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 CHAF1BQ13112 559 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 AADACL4Q5VUY2 407 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 LINC00346Q8IVM7 164 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 RFLNBQ8N5W9 214 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 OR4D9Q8NGE8 314 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 ANGPTL6Q8NI99 470 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 DVL3Q92997 716 aaPredicted RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 ARL6Q9H0F7 186 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 METTL7AQ9H8H3 244 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 TCF20Q9UGU0 1960 aaKnown RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 RIF1Q5UIP0 2472 aaKnown RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 C17orf51A8MQB3 221 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 G3V3Y1 287 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 IFNA6P05013 189 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 SPOCK1Q08629 439 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 KLHL26Q53HC5 615 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ZBTB37Q5TC79 503 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 APOOLQ6UXV4 268 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 RASGRP3Q8IV61 690 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR2T4Q8NH00 348 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR52N1Q8NH53 320 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 GPR119Q8TDV5 335 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR2M2Q96R28 347 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 S100A13Q99584 98 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ARHGDIGQ99819 225 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 UBQLN4Q9NRR5 601 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 CUTCQ9NTM9 273 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 GMEB2Q9UKD1 530 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 PLCL2Q9UPR0 1127 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 SIGLEC7Q9Y286 467 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 RBBP9O75884 186 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 DOC2BQ14184 412 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ZNF628Q5EBL2 1059 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 LIPNQ5VXI9 398 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 KIAA0895LQ68EN5 471 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR2L13Q8N349 312 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 SEMA6CQ9H3T2 930 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ZNF576Q9H609 170 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 CES1P1Q9UKY3 287 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 POLHQ9Y253 713 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 A0A1B0GVI7 797 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ZNF264O43296 627 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 FCARP24071 287 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 LIMS1P48059 325 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.61□□□□□ -0.231e-6■□□□□ 9
CUX1-215ENST00000556210 PCGF3Q3KNV8 242 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 SLC6A19Q695T7 634 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 SSX6Q7RTT6 188 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 BOLLQ8N9W6 283 aaKnown RBP13.61□□□□□ -0.23
CUX1-215ENST00000556210 ATOH1Q92858 354 aaPredicted RBP13.61□□□□□ -0.23
CUX1-215ENST00000556210 EMC6Q9BV81 110 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 PLEKHA1Q9HB21 404 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 MEPEQ9NQ76 525 aaPredicted RBP13.61□□□□□ -0.23
CUX1-215ENST00000556210 OBP2AQ9NY56 170 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 MED11Q9P086 117 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 KLHL9Q9P2J3 617 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 CXorf51AA0A1B0GTR3 108 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 RAF1P04049 648 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 HEXBP07686 556 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 GDNFP39905 211 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 HNRNPKP61978 463 aaKnown RBP eCLIP13.61□□□□□ -0.231e-6■■■■□ 24.1
CUX1-215ENST00000556210 FAM53BQ14153 422 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR7A5Q15622 319 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 COL28A1Q2UY09 1125 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 RNF113BQ8IZP6 322 aaKnown RBP13.61□□□□□ -0.23
CUX1-215ENST00000556210 BCORP1Q8N888 145 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 OR5M1Q8NGP8 315 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 ELOVL3Q9HB03 270 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 COPZ2Q9P299 210 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 NCDNQ9UBB6 729 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 KLF15Q9UIH9 416 aa13.61□□□□□ -0.23
CUX1-215ENST00000556210 C2CD4DB7Z1M9 353 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 SIX6O95475 246 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 FAUP35544 74 aaKnown RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 VEGFCP49767 419 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 MRPS21P82921 87 aaKnown RBP13.6□□□□□ -0.23
CUX1-215ENST00000556210 TMEM225Q6GV28 225 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 LIN54Q6MZP7 749 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 PLPP7Q8NBV4 271 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 OR51D1Q8NGF3 324 aa13.6□□□□□ -0.23
CUX1-215ENST00000556210 DAZLQ92904 295 aaKnown RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms