RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LCN1P31025 176 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 UQCRC1P31930 480 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CAPZBP47756 277 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 P2RX3P56373 397 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CCINQ13939 588 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 NNATQ16517 81 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF542PQ5EBM4 170 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CDC20BQ86Y33 519 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 LSM14AQ8ND56 463 aaKnown RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 HMGB4Q8WW32 186 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 FCAMRQ8WWV6 532 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 HAVCR1Q96D42 359 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MAP6Q96JE9 813 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SLC25A18Q9H1K4 315 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CCDC86Q9H6F5 360 aaKnown RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 LIN7BQ9HAP6 207 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 TCF7L1Q9HCS4 588 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MSRAQ9UJ68 235 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 FBXL3Q9UKT7 428 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 FOXJ3Q9UPW0 622 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CACNA1IQ9P0X4 2223 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 A0A1B0GVT2 93 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 B4DGG1 531 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SCDO00767 359 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 PHYHO14832 338 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SNAPC5O75971 98 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 HPGDP15428 266 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MAOAP21397 527 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CTXN1P60606 82 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 CAMK2DQ13557 499 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 GXYLT1Q4G148 440 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ESCO2Q56NI9 601 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 TCTE1Q5JU00 501 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 METTL11BQ5VVY1 283 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 GPR139Q6DWJ6 353 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 PWWP2BQ6NUJ5 590 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 TEX261Q6UWH6 196 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MED25Q71SY5 747 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 FCRLAQ7L513 359 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 TIGD4Q8IY51 512 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 IZUMO1Q8IYV9 350 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 C10orf53Q8N6V4 93 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ZSCAN1Q8NBB4 408 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 OR2T4Q8NH00 348 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 OR5AK2Q8NH90 309 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 THRSPQ92748 146 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MARVELD3Q96A59 401 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MIB2Q96AX9 1013 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 LCORQ96JN0 433 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ADAD1Q96M93 576 aaKnown RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SMAD5Q99717 465 aaKnown RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 SPRTNQ9H040 489 aaPredicted RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 DLL4Q9NR61 685 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 MRTO4Q9UKD2 239 aaKnown RBP12.29□□□□□ -0.44
SHMT2-222ENST00000555774 RCE1Q9Y256 329 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 U3KQ87 197 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 ATG2BQ96BY7 2078 aa12.29□□□□□ -0.44
SHMT2-222ENST00000555774 LINC00862A6NCI5 91 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 PRR32B1ATL7 298 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 BLOC1S5-TXNDC5H3BN57 136 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ACOT7O00154 380 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SLC22A5O76082 557 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ABHD16AO95870 558 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ADRB1P08588 477 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 PPICP45877 212 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 FASLGP48023 281 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SLC6A8P48029 635 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 GABRA4P48169 554 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 EGR3Q06889 387 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SRSF5Q13243 272 aaKnown RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 C1orf61Q13536 156 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 CAMK2BQ13554 666 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ERV3-1Q14264 604 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 RAB30Q15771 203 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 LYPD8Q6UX82 237 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SEZ6L2Q6UXD5 910 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 STAC2Q6ZMT1 411 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 OR6V1Q8N148 313 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF433Q8N7K0 673 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 OR52I2Q8NH67 350 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SYNPRQ8TBG9 265 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 DACT3Q96B18 629 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 SORCS2Q96PQ0 1159 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 CHRNA10Q9GZZ6 450 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 OR5V1Q9UGF6 321 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 MRM2Q9UI43 246 aaKnown RBP12.28□□□□□ -0.44
SHMT2-222ENST00000555774 CD207Q9UJ71 328 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 TMEM14AQ9Y6G1 99 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ANKRD20A5PA0PJZ0 165 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 LILRA5A6NI73 299 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 IDSB3KWA1 339 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ZNF264O43296 627 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 TSC22D2O75157 780 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 DNASE1P24855 282 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 PTH2RP49190 550 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 ART1P52961 327 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 CD226Q15762 336 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 TMEM69Q5SWH9 247 aa12.28□□□□□ -0.44
SHMT2-222ENST00000555774 LIPNQ5VXI9 398 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms