RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ZIC3O60481 467 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 EIF1BO60739 113 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PTP4A3O75365 173 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TRAPPC6AO75865 159 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 OR7A10O76100 309 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NDUFB2O95178 105 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 LYPD3O95274 346 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SNAP29O95721 258 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CH25HO95992 272 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 THY1P04216 161 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SFTPCP11686 197 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZNF17P17021 662 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CCNA2P20248 432 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 MYF6P23409 242 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CHMP24386 653 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GDF1P27539 372 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 POU1F1P28069 291 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SLC6A6P31641 620 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 IDUAP35475 653 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 DNASE1L1P49184 302 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 MEOX1P50221 254 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TNFSF10P50591 281 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 RPS3AP61247 264 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PPIAP62937 165 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CSNK2A1P68400 391 aaPredicted RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SLC35A1P78382 337 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ADARB1P78563 741 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PTGES3Q15185 160 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SF3B4Q15427 424 aaKnown RBP eCLIP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SEC23BQ15437 767 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TOMM34Q15785 309 aaPredicted RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 HYAL4Q2M3T9 481 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TMEM44Q2T9K0 475 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PLPPR5Q32ZL2 321 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NDUFAF6Q330K2 333 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZMAT1Q5H9K5 638 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 C1orf140Q5VVS0 124 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 MEDAGQ5VYS4 303 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZNF770Q6IQ21 691 aaPredicted RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 RPUSD3Q6P087 351 aaKnown RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZNF585AQ6P3V2 769 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CRIP3Q6Q6R5 217 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SMARCD3Q6STE5 483 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 KLHL17Q6TDP4 642 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 DPY19L2P2Q6ZN68 376 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CHMP1BQ7LBR1 199 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GALNTL5Q7Z4T8 443 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GALNT5Q7Z7M9 940 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 P3H2Q8IVL5 708 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 HS3ST5Q8IZT8 346 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GTPBP8Q8N3Z3 284 aaPredicted RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 MARVELD2Q8N4S9 558 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 AMER2Q8N7J2 671 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 STPG3Q8N7X2 389 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 MDS2Q8NDY4 140 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NUDT10Q8NFP7 164 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 OR5J2Q8NH18 312 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 OR14L1PQ8NHC6 308 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZHX1-C8orf76Q96EF9 292 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NUDT11Q96G61 164 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SCMH1Q96GD3 660 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PLEKHA8Q96JA3 519 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZNF570Q96NI8 536 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GNRHR2Q96P88 292 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SORCS2Q96PQ0 1159 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SIGLEC12Q96PQ1 595 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SH3GL3Q99963 347 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NIPSNAP1Q9BPW8 284 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TSSK6Q9BXA6 273 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GABARAPL3Q9BY60 117 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ANKRD60Q9BZ19 345 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 RTN4RQ9BZR6 473 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ADNPQ9H2P0 1102 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CDIP1Q9H305 208 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 RIBC2Q9H4K1 309 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 LDAHQ9H6V9 325 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SEC61A2Q9H9S3 476 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 FKRPQ9H9S5 495 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SLC25A19Q9HC21 320 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PROK2Q9HC23 129 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ACKR4Q9NPB9 350 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 KLHL1Q9NR64 748 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CLN6Q9NWW5 311 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 IMPAD1Q9NX62 359 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 TUBA8Q9NY65 449 aaPredicted RBP4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SCN3BQ9NY72 215 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 PFDN2Q9UHV9 154 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ZNF229Q9UJW7 825 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SIGLEC7Q9Y286 467 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 NTNG1Q9Y2I2 539 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 SLC6A5Q9Y345 797 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 ATP23Q9Y6H3 246 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CNTRLQ7Z7A1 2325 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 GVINP1Q7Z2Y8 2422 aa4.51□□□□□ -1.69
VTI1B-202ENST00000553619 CEP250Q9BV73 2442 aa4.5□□□□□ -1.69
VTI1B-202ENST00000553619 A0A087WV48 116 aa4.5□□□□□ -1.69
VTI1B-202ENST00000553619 MAGEA13PA6NCF6 341 aa4.5□□□□□ -1.69
VTI1B-202ENST00000553619 ENO4A6NNW6 628 aa4.5□□□□□ -1.69
VTI1B-202ENST00000553619 ZAR1LA6NP61 321 aa4.5□□□□□ -1.69
VTI1B-202ENST00000553619 BLOC1S5-TXNDC5H3BN57 136 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms