RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	C1QTNF6	Q9BXI9	259 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	TRIM2	Q9C040	744 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	GHITM	Q9H3K2	345 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	CDCP1	Q9H5V8	836 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	FKRP	Q9H9S5	495 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	TMEM5	Q9Y2B1	443 aa		13.49	□□□□□ -0.25
DDX55-209	ENST00000542286	ACOD1	A6NK06	481 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	NPIPB9	F8W1W9	429 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	AK1	P00568	194 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ADRB1	P08588	477 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	CSNK1E	P49674	416 aa	Known RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	GBX2	P52951	348 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	CLDN12	P56749	244 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	HSF2	Q03933	536 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	TOMM34	Q15785	309 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	C16orf47	Q6ZP98	133 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	KRT74	Q7RTS7	529 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF615	Q8N8J6	731 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	TRMT10A	Q8TBZ6	339 aa	Known RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ZFP3	Q96NJ6	502 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ABCG5	Q9H222	651 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	FKBP7	Q9Y680	259 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	FAM221B	A6H8Z2	402 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	TVP23A	A6NH52	213 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	PRAMEF2	O60811	474 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	SYP	P08247	313 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	CD3G	P09693	182 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	OR1D5	P58170	312 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	UBXN2B	Q14CS0	331 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	MANEA	Q5SRI9	462 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	PRSS45	Q7RTY3	260 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	KANSL1	Q7Z3B3	1105 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ST8SIA4	Q92187	359 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	DACT3	Q96B18	629 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	SCMH1	Q96GD3	660 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	HSPA12B	Q96MM6	686 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	NUDT15	Q9NV35	164 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	ST6GALNAC2	Q9UJ37	374 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	TMEM131	Q92545	1883 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	FER1L5	A0AVI2	2057 aa		13.48	□□□□□ -0.25
DDX55-209	ENST00000542286	CLDN4	O14493	209 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	NDUFB2	O95178	105 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	ATF1	P18846	271 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	CDKN2A	P42771	156 aa	Known RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	ZP2	Q05996	745 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	PUDP	Q08623	228 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	STPG1	Q5TH74	334 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	LINC00114	Q6XXX2	140 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	OR10Z1	Q8NGY1	313 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	PTPMT1	Q8WUK0	201 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	SNX33	Q8WV41	574 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	DERL3	Q96Q80	235 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	GSX2	Q9BZM3	304 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	SRA1	Q9HD15	236 aa	Known RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	MRPL15	Q9P015	296 aa	Known RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286		A0A1W2PPL8	197 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	C7orf66	A4D0T2	115 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	C10orf142	B7Z368	130 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	PLPP2	O43688	288 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	PTHLH	P12272	177 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	GABRA4	P48169	554 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	GDI2	P50395	445 aa	Known RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	CCR5	P51681	352 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	LTB	Q06643	244 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	HBM	Q6B0K9	141 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	MZT2A	Q6P582	158 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	LEG1	Q6P5S2	330 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	CHMP1B	Q7LBR1	199 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	SLC35F2	Q8IXU6	374 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	NPEPL1	Q8NDH3	523 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	THAP4	Q8WY91	577 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	HOXB13	Q92826	284 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	AHCYL2	Q96HN2	611 aa	Known RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	LINC00052	Q96N35	136 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	OR51J1	Q9H342	316 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	GPR27	Q9NS67	375 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	C14orf105	Q9NVL8	296 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	PTTG3P	Q9NZH4	202 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286	KLHDC2	Q9Y2U9	406 aa		13.47	□□□□□ -0.25
DDX55-209	ENST00000542286		A0A087WUJ7	227 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	HPGD	P15428	266 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	MTNR1B	P49286	362 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	NANOS3	P60323	173 aa	Known RBP	13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	ZNF141	Q15928	474 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	TUSC1	Q2TAM9	212 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	DMKN	Q6E0U4	476 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	ARHGAP11A	Q6P4F7	1023 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	CFAP77	Q6ZQR2	320 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	MS4A15	Q8N5U1	240 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	MARC2	Q969Z3	335 aa		13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	KTI12	Q96EK9	354 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	THAP7	Q9BT49	309 aa	Predicted RBP	13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	MRPS33	Q9Y291	106 aa	Known RBP	13.46	□□□□□ -0.25
DDX55-209	ENST00000542286	TRBV2	A0A0J9YWF9	115 aa		13.46	□□□□□ -0.26
DDX55-209	ENST00000542286	NSA2	O95478	260 aa	Known RBP	13.46	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms