RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 EFCAB1Q9HAE3 211 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 MEPEQ9NQ76 525 aaPredicted RBP12.44□□□□□ -0.42
USP28-209ENST00000540925 ZNF701Q9NV72 531 aaPredicted RBP12.44□□□□□ -0.42
USP28-209ENST00000540925 ABCD2Q9UBJ2 740 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 SLC7A7Q9UM01 511 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 SH3GLB1Q9Y371 365 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 ALPK2Q86TB3 2170 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 ARID1AO14497 2285 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 GMNCA6NCL1 334 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 OVOL3O00110 214 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 PLPP3O14495 311 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 OR5F1O95221 314 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 IGF2P01344 180 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 IFNA14P01570 189 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 CBLP22681 906 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 GTF2E2P29084 291 aaKnown RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 PRDX6P30041 224 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 SLC7A2P52569 658 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 CLDN17P56750 224 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 SELENOWP63302 87 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 TGFBR3Q03167 851 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 LIPEQ05469 1076 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 PUDPQ08623 228 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 FOXD4Q12950 439 aaPredicted RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 PGGHGQ32M88 737 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 C9orf135Q5VTT2 229 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 NIPAL3Q6P499 406 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 ABHD12BQ7Z5M8 362 aaPredicted RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 PXKQ7Z7A4 578 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 PIGWQ7Z7B1 504 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 OR1K1Q8NGR3 316 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 MAGEE2Q8TD90 523 aaPredicted RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 PROX1Q92786 737 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 BCL2L2Q92843 193 aaPredicted RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 ALKBH3Q96Q83 286 aaPredicted RBP12.43□□□□□ -0.42
USP28-209ENST00000540925 GSX2Q9BZM3 304 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 AMDHD2Q9Y303 409 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 PLCE1Q9P212 2302 aa12.43□□□□□ -0.42
USP28-209ENST00000540925 ZANQ9Y493 2812 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 A0A1W2PR80 420 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 ZNF587BE7ETH6 402 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 ASAH2BP0C7U1 165 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 PTAFRP25105 342 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 CD40P25942 277 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 GSK3BP49841 420 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 NKX6-1P78426 367 aaPredicted RBP12.42□□□□□ -0.42
USP28-209ENST00000540925 ZP4Q12836 540 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 HIKESHIQ53FT3 197 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 SHEQ5VZ18 495 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 PRSS57Q6UWY2 283 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 SLC46A3Q7Z3Q1 461 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 NKAIN4Q8IVV8 208 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 OR5J2Q8NH18 312 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 RNF217Q8TC41 542 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 FBXW5Q969U6 566 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 LRR1Q96L50 414 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 ASPNQ9BXN1 380 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 FKRPQ9H9S5 495 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 OBP2BQ9NPH6 170 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 TAS2R5Q9NYW4 299 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 NOX1Q9Y5S8 564 aa12.42□□□□□ -0.42
USP28-209ENST00000540925 ARPC4-TTLL3A0A0A6YYG9 625 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 ABCD4O14678 606 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 CLOCKO15516 846 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 SMPD2O60906 423 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 SLC43A1O75387 559 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 SOD3P08294 240 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 TSPAN19P0C672 248 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 THRBP10828 461 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 FUT4P22083 530 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 RBM34P42696 430 aaKnown RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 OR1E2P47887 323 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 NUDT2P50583 147 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 ZNF83P51522 516 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 SH3BGRP55822 239 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 ROR2Q01974 943 aaKnown RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 SPOCK1Q08629 439 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 PMS2P3Q13401 168 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 PIN1Q13526 163 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 TBRG1Q3YBR2 411 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 LRRC23Q53EV4 343 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 PHYHD1Q5SRE7 291 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 TTC33Q6PID6 262 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 TMEM108Q6UXF1 575 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 UEVLDQ8IX04 471 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 C20orf196Q8IYI0 205 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 LRRC17Q8N6Y2 441 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 LIPHQ8WWY8 451 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 CMTM5Q96DZ9 223 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 ZNF837Q96EG3 531 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 TXNDC15Q96J42 360 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 RADILQ96JH8 1075 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 GRIP2Q9C0E4 1043 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 FAM107BQ9H098 131 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 NSRP1Q9H0G5 558 aaKnown RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 ALG2Q9H553 416 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 GPR35Q9HC97 309 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 CRNNQ9UBG3 495 aaPredicted RBP12.41□□□□□ -0.42
USP28-209ENST00000540925 RIMS3Q9UJD0 308 aa12.41□□□□□ -0.42
USP28-209ENST00000540925 ZNF229Q9UJW7 825 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms