RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ZNF79Q15937 498 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 MAPK14Q16539 360 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 DUSP5Q16690 384 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF181Q2M3W8 571 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 TRMT12Q53H54 448 aaKnown RBP7.43□□□□□ -1.22
NEDD8-207ENST00000533242 MEDAGQ5VYS4 303 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 MFSD12Q6NUT3 480 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 WDR88Q6ZMY6 472 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 C16orf47Q6ZP98 133 aaPredicted RBP7.43□□□□□ -1.22
NEDD8-207ENST00000533242 RELL2Q8NC24 303 aaPredicted RBP7.43□□□□□ -1.22
NEDD8-207ENST00000533242 PROKR2Q8NFJ6 384 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 OR56A1Q8NGH5 318 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 GATAD2BQ8WXI9 593 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 RASL10BQ96S79 203 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 TM9SF2Q99805 663 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 MND1Q9BWT6 205 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 NUAK2Q9H093 628 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 LDAHQ9H6V9 325 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 SMURF1Q9HCE7 757 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 PRTFDC1Q9NRG1 225 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 BEX4Q9NWD9 120 aaPredicted RBP7.43□□□□□ -1.22
NEDD8-207ENST00000533242 MYOTQ9UBF9 498 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 TBC1D24Q9ULP9 559 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 DIMT1Q9UNQ2 313 aaKnown RBP7.43□□□□□ -1.22
NEDD8-207ENST00000533242 CFL2Q9Y281 166 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 V9GYH0 126 aa7.43□□□□□ -1.22
NEDD8-207ENST00000533242 ACANP16112 2415 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 FBN3Q75N90 2809 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 TRGV5A0A0B4J1U4 118 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 NPIPA5A0A0B4J1W7 369 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 NPIPA7E9PJI5 369 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF670-ZNF695F2Z2N8 137 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 G3V3Y1 287 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 DVL2O14641 736 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 ALOX5P09917 674 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 LIMS3P0CW19 117 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 LIMS4P0CW20 117 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 NPIPA8P0DM63 369 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 IMPDH2P12268 514 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 AZGP1P25311 298 aaKnown RBP7.42□□□□□ -1.22
NEDD8-207ENST00000533242 ETV6P41212 452 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 CAV3P56539 151 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 SMIM11AP58511 58 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 RPS25P62851 125 aaKnown RBP7.42□□□□□ -1.22
NEDD8-207ENST00000533242 PRR5P85299 388 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF45Q02386 682 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 TGM3Q08188 693 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 FOXO1Q12778 655 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 COX10Q12887 443 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 SHEQ5VZ18 495 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 C22orf42Q6IC83 251 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 MINDY2Q8NBR6 621 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF485Q8NCK3 441 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 OR4F15Q8NGB8 312 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 OR9Q1Q8NGQ5 310 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 SGCZQ96LD1 299 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 RACGAP1Q9H0H5 632 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 EXO5Q9H790 373 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 TXNL4BQ9NX01 149 aaKnown RBP7.42□□□□□ -1.22
NEDD8-207ENST00000533242 KCNE5Q9UJ90 142 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 SF3B6Q9Y3B4 125 aaKnown RBP7.42□□□□□ -1.22
NEDD8-207ENST00000533242 UGT2A1Q9Y4X1 527 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 CLDN16Q9Y5I7 305 aa7.42□□□□□ -1.22
NEDD8-207ENST00000533242 NIPBLQ6KC79 2804 aaeCLIP7.42□□□□□ -1.22
NEDD8-207ENST00000533242 SHISA3A0PJX4 238 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TGFBR3LH3BV60 316 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 CLDN4O14493 209 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 AP3D1O14617 1153 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 RGS5O15539 181 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 KLF4O43474 513 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 LDB3O75112 727 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 RAB36O95755 333 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 P04436 131 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 CELA3AP09093 270 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ACP2P11117 423 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF136P52737 540 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TPTEP56180 551 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 RAB38P57729 211 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 FXYD6P3P58550 94 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 MLLT11Q13015 90 aaPredicted RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ELAVL1Q15717 326 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 BAK1Q16611 211 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 SLC25A30Q5SVS4 291 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TYW3Q6IPR3 259 aaKnown RBP7.41□□□□□ -1.22
NEDD8-207ENST00000533242 HEPHL1Q6MZM0 1159 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 OPN5Q6U736 354 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 HSDL2Q6YN16 418 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 ZNF730Q6ZMV8 503 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 UTS2BQ765I0 119 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 C16orf62Q7Z3J2 963 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 LHFPL3Q86UP9 236 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 PRIMA1Q86XR5 153 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 KRTAP1-3Q8IUG1 177 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 NRMQ8IXM6 262 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 OR8K3Q8NH51 312 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 OR52P1PQ8NH57 321 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 TMEM163Q8TC26 289 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 GAL3ST3Q96A11 431 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 RNFT2Q96EX2 444 aa7.41□□□□□ -1.22
NEDD8-207ENST00000533242 NEDD4LQ96PU5 975 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms