RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SLCO1A2P46721 670 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RPL5P46777 297 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 RABIFP47224 123 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PITPNBP48739 271 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GNG10P50151 68 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RAB13P51153 203 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CAV2P51636 162 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CEBPGP53567 150 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ATXN3P54252 364 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PRPS1P60891 318 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ST8SIA6P61647 398 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 IFITM2Q01629 132 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CYP24A1Q07973 514 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ELP6Q0PNE2 266 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 IL24Q13007 206 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SLC39A6Q13433 755 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SELPLGQ14242 412 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PON3Q15166 354 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 USF2Q15853 346 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 SSX2Q16385 188 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 HFEQ30201 348 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TRIM16LQ309B1 348 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GLRA4Q5JXX5 417 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LDLRAP1Q5SW96 308 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KPRPQ5T749 579 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 DDI2Q5TDH0 399 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PRAMEF20Q5VT98 475 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZFP1Q6P2D0 407 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TMEM270Q6UE05 265 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LINC00299Q6ZSB3 139 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KCTD9Q7L273 389 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 EFL1Q7Z2Z2 1120 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 BIVMQ86UB2 503 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD46Q86W74 232 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TRIM69Q86WT6 500 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RALGPS2Q86X27 583 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 SIAH3Q8IW03 269 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MICU2Q8IYU8 434 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 THEM5Q8N1Q8 247 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZCCHC7Q8N3Z6 543 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 RIBC1Q8N443 379 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 KIF2BQ8N4N8 673 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ASCC1Q8N9N2 400 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 FNDC5Q8NAU1 212 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KIAA0895Q8NCT3 520 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CATSPER1Q8NEC5 780 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PNPT1Q8TCS8 783 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 DTD1Q8TEA8 209 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 HTR3CQ8WXA8 447 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 THRSPQ92748 146 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 BCL2L2Q92843 193 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TCEAL3Q969E4 200 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FAM46BQ96A09 425 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ISG20Q96AZ6 181 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CCDC51Q96ER9 411 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 DNAJC1Q96KC8 554 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 KCNK16Q96T55 309 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 KIFC1Q9BW19 673 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TBC1D10AQ9BXI6 508 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 IDI2Q9BXS1 227 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GSDMCQ9BYG8 508 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RAB17Q9H0T7 212 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 OR52A5Q9H2C5 316 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PPA2Q9H2U2 334 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SAV1Q9H4B6 383 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 MYOZ1Q9NP98 299 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 ASCL3Q9NQ33 180 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FGFR1OP2Q9NVK5 253 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CYP39A1Q9NYL5 469 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TMOD2Q9NZR1 351 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ANKMY1Q9P2S6 941 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RSL24D1Q9UHA3 163 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PSORS1C1Q9UIG5 152 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TMED7Q9Y3B3 224 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ASB4Q9Y574 426 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NUBP2Q9Y5Y2 271 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ETV7Q9Y603 341 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FKBP7Q9Y680 259 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SPACA6W5XKT8 324 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RFX7Q2KHR2 1363 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CARMIL3Q8ND23 1372 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PARD3Q8TEW0 1356 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MYH11P35749 1972 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 NRXN1Q9ULB1 1477 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 PFASO15067 1338 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 AFF2P51816 1311 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MYH7P12883 1935 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 KDM6AO15550 1401 aaPredicted RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 DAPK1P53355 1430 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 ANKRD50Q9ULJ7 1429 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CDK13Q14004 1512 aaKnown RBP1.47□□□□□ -2.17
NUP54-208ENST00000508604 A0A075B6Q4 140 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 A0A087X0K7 114 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 GNG14A0A1W2PPG7 69 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 GSAPA4D1B5 854 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 CCDC160A6NGH7 325 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 METTL15A6NJ78 407 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 SIGLEC16A6NMB1 481 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 USP27XA6NNY8 438 aa1.47□□□□□ -2.17
NUP54-208ENST00000508604 MEI4A8MW99 385 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms