RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 ABRAXAS2Q15018 415 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 SLC36A2Q495M3 483 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 SYTL3Q4VX76 610 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 SLC35D3Q5M8T2 416 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 MTFR2Q6P444 385 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 TMIGD1Q6UXZ0 262 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 LHFPL3Q86UP9 236 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 OOSP2Q86WS3 158 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 LGI4Q8N135 537 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 ADAMTS17Q8TE56 1095 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 WNT2BQ93097 391 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 SLC25A32Q9H2D1 315 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 METTL1Q9UBP6 276 aaKnown RBP7.02□□□□□ -1.28
USP4-211ENST00000485450 KLK13Q9UKR3 277 aa7.02□□□□□ -1.28
USP4-211ENST00000485450 CFAP54Q96N23 3096 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 ASCC3Q8N3C0 2202 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 COLCA2A8K830 154 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 PHYHO14832 338 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 TXNL1O43396 289 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 SUSD5O60279 629 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 GALR3O60755 368 aaPredicted RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 SIX6O95475 246 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 AHRP35869 848 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 CDKN2CP42773 168 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 HSD11B2P80365 405 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 ZNF155Q12901 538 aaPredicted RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 TPBGQ13641 420 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 PTRHD1Q6GMV3 140 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 LAPTM4BQ86VI4 370 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 PTOV1Q86YD1 416 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 C19orf47Q8N9M1 422 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 PXT1Q8NFP0 134 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 SMPDL3AQ92484 453 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 GCDHQ92947 438 aaPredicted RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 C1GALT1C1Q96EU7 318 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 LRR1Q96L50 414 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 SLC6A16Q9GZN6 736 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 EGLN1Q9GZT9 426 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 AKAP7Q9P0M2 348 aaPredicted RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 YARS2Q9Y2Z4 477 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 MRPS18CQ9Y3D5 142 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 RPL36Q9Y3U8 105 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 PCDHB11Q9Y5F2 797 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 IGHV5-51A0A0C4DH38 117 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 SPAARA0A1B0GVQ0 90 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 B4DGG1 531 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 TFP02787 698 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 RFX3P48380 749 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 TNFRSF9Q07011 255 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 VEZF1Q14119 521 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 CCSMST1Q4G0I0 132 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 MRPL14Q6P1L8 145 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 PAQR6Q6TCH4 344 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 SKA3Q8IX90 412 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 MFSD9Q8NBP5 474 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 BEST4Q8NFU0 473 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 STK35Q8TDR2 534 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 ACOT12Q8WYK0 555 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 ORAI1Q96D31 301 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 TPD52L3Q96J77 140 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 NUDT22Q9BRQ3 303 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 AICDAQ9GZX7 198 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 WDR54Q9H977 334 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 ISYNA1Q9NPH2 558 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 NPDC1Q9NQX5 325 aaPredicted RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 CYSLTR2Q9NS75 346 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 PIPOXQ9P0Z9 390 aa7.02□□□□□ -1.29
USP4-211ENST00000485450 MDC1Q14676 2089 aaKnown RBP7.02□□□□□ -1.29
USP4-211ENST00000485450 SPENQ96T58 3664 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 CUL9Q8IWT3 2517 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 TRDV1A0A1B0GX56 115 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 TRBC2A0A5B9 178 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 NCF1BA6NI72 391 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 NCF1CA8MVU1 366 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 TMEM229AB2RXF0 380 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 KDM4EB2RXH2 506 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 H0YIV9 168 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ZNF593O00488 134 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 RGS14O43566 566 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SLC28A2O43868 658 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SRPX2O60687 465 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 PRAMEF4O60810 478 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SCN2BO60939 215 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 C6orf47O95873 294 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 OTCP00480 354 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 HPXP02790 462 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 NPSP0C0P6 89 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 TMIGD3P0DMS9 266 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 GPX2P18283 190 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 GIFP27352 417 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 GABRA5P31644 462 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ETV5P41161 510 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 RGS4P49798 205 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 CRYBA2P53672 197 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 FABP5Q01469 135 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 AKIRIN2Q53H80 203 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 PRAMEF9Q5VWM5 478 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ETV3LQ6ZN32 361 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SVBPQ8N300 66 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 OR56B4Q8NH76 319 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms