RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KIR2DL3P43628 341 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 CHAF1BQ13112 559 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 OR7A5Q15622 319 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 CD300LDQ6UXZ3 194 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 MARCH3Q86UD3 253 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 IL17RDQ8NFM7 739 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 ADAMTS14Q8WXS8 1223 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 LCORQ96JN0 433 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 FGF21Q9NSA1 209 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 RDH8Q9NYR8 311 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 KLF15Q9UIH9 416 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SIGLEC7Q9Y286 467 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SPTY2D1-AS1A0A0U1RR47 76 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 A0A1B0GVI7 797 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 GPRIN2O60269 458 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 CREBL2O60519 120 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 CYB5AP00167 134 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 LALBAP00709 142 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 KLK3P07288 261 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 HCKP08631 526 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 RBMS1P29558 406 aaKnown RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SSTR2P30874 369 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 GDNFP39905 211 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SLC6A8P48029 635 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 RRAS2P62070 204 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 EIF2B1Q14232 305 aaKnown RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 GPR176Q14439 515 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 TMEM164Q5U3C3 297 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 PRAMEF17Q5VTA0 474 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 LIPNQ5VXI9 398 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 ZAR1Q86SH2 424 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 PEG10Q86TG7 708 aaKnown RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SNX18Q96RF0 628 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 EDEM2Q9BV94 578 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 TRPV4Q9HBA0 871 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 NRIP3Q9NQ35 241 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 FBXL3Q9UKT7 428 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 ZNF628Q5EBL2 1059 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 GARNL3Q5VVW2 1013 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 BAIAP2L2Q6UXY1 529 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 DTWD2Q8NBA8 298 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 SUN5Q8TC36 379 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 PCNPQ8WW12 178 aaKnown RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 KIAA1143Q96AT1 154 aaPredicted RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 HCAR1Q9BXC0 346 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 NXF5Q9H1B4 397 aaKnown RBP10.67□□□□□ -0.7
NPHP4-204ENST00000460696 ISYNA1Q9NPH2 558 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 POLE3Q9NRF9 147 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 NUBP2Q9Y5Y2 271 aa10.67□□□□□ -0.7
NPHP4-204ENST00000460696 C5orf51A6NDU8 294 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 TLCD2A6NGC4 264 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 C4orf47A7E2U8 309 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 E9PI62 339 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 FABP7O15540 132 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 HSD17B7P56937 341 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 FOXC1Q12948 553 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 RAB11BQ15907 218 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 SGCAQ16586 387 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 SLC25A35Q3KQZ1 300 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 APOOLQ6UXV4 268 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 COMTD1Q86VU5 262 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 OR13C3Q8NGS6 347 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 NUDT22Q9BRQ3 303 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 PLSCR3Q9NRY6 295 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 ING1Q9UK53 422 aaPredicted RBP10.66□□□□□ -0.7
NPHP4-204ENST00000460696 OR7A10O76100 309 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 ATP1B1P05026 303 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 EIF4EP06730 217 aaKnown RBP10.66□□□□□ -0.7
NPHP4-204ENST00000460696 SPI1P17947 270 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 OR3A3P47888 321 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 OR3A2P47893 321 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 CLRN1P58418 232 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 FUT5Q11128 374 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 RDH10Q8IZV5 341 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 DNAAF1Q8NEP3 725 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 TMEM43Q9BTV4 400 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.66□□□□□ -0.7
NPHP4-204ENST00000460696 PTGES2Q9H7Z7 377 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 MED11Q9P086 117 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 PFDN2Q9UHV9 154 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 CES1P1Q9UKY3 287 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 RARRES3Q9UL19 164 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 RTTNQ86VV8 2226 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 A0A1W2PPC4 97 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 A0A1W2PQF6 199 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 ZNF593O00488 134 aaPredicted RBP10.66□□□□□ -0.7
NPHP4-204ENST00000460696 GATBO75879 557 aaKnown RBP10.66□□□□□ -0.7
NPHP4-204ENST00000460696 UBL3O95164 117 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 TCRBP04435 133 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 ERGP11308 486 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 HTR2AP28223 471 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 LIMS1P48059 325 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 DGCR2P98153 550 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 GLO1Q04760 184 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 MELKQ14680 651 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 SLC6A19Q695T7 634 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 PM20D2Q8IYS1 436 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 ZNF283Q8N7M2 679 aa10.66□□□□□ -0.7
NPHP4-204ENST00000460696 TMEM52Q8NDY8 209 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms