RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 INTS1Q8N201 2190 aaKnown RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 NBASA2RRP1 2371 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 VGLL3A8MV65 326 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NPIPA2E9PIF3 369 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NPIPA3F8WFD2 350 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 BCKDKO14874 412 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SMAD9O15198 467 aaKnown RBP9.81□□□□□ -0.84
SCN9A-205ENST00000454569 HCN1O60741 890 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SERPINI2O75830 405 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NDUFB2O95178 105 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 MT-ATP6P00846 226 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 EIF1AXP47813 144 aaKnown RBP9.81□□□□□ -0.84
SCN9A-205ENST00000454569 CHN2P52757 468 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 CARD18P57730 90 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 EFNB1P98172 346 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 PMS2P3Q13401 168 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SGCBQ16585 318 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF691Q5VV52 312 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 TTC23Q5W5X9 447 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 HBMQ6B0K9 141 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 C5orf46Q6UWT4 87 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NANOGNBQ7Z5D8 188 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 MEIOBQ8N635 442 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 ZPLD1Q8TCW7 415 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SNRNP40Q96DI7 357 aaKnown RBP9.81□□□□□ -0.84
SCN9A-205ENST00000454569 Q96M85 177 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 IFT27Q9BW83 186 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 TAPBPLQ9BX59 468 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SLC25A18Q9H1K4 315 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 SLC25A19Q9HC21 320 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 CHST11Q9NPF2 352 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NRIP3Q9NQ35 241 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 ASF1BQ9NVP2 202 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 ALKBH4Q9NXW9 302 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 TVP23BQ9NYZ1 205 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 RNF6Q9Y252 685 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 GPR52Q9Y2T5 361 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 IER3IP1Q9Y5U9 82 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 PCNX1Q96RV3 2341 aa9.81□□□□□ -0.84
SCN9A-205ENST00000454569 NCOA6Q14686 2063 aaPredicted RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 EIF4E1BA6NMX2 242 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 PRKYO43930 277 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 RCBTB2O95199 551 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HIST1H2ABP04908 130 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 LYNP07948 512 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 GABRB1P18505 474 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 AHCYP23526 432 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 NTF4P34130 210 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TDGF1P3P51864 188 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 NUP107P57740 925 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 CTXN1P60606 82 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ISL1P61371 349 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 RUNX1T1Q06455 604 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 CD47Q08722 323 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 MELKQ14680 651 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 SMN1Q16637 294 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ST3GAL2Q16842 350 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 PGGHGQ32M88 737 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ALG10Q5BKT4 473 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 EMC4Q5J8M3 183 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ESPNLQ6ZVH7 1005 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 H1FNTQ75WM6 255 aaPredicted RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HIST3H2AQ7L7L0 130 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 FAM122BQ7Z309 247 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ENTHD1Q8IYW4 607 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 GHDCQ8N2G8 530 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TEX19Q8NA77 164 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 OR5M9Q8NGP3 310 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 CNIH3Q8TBE1 160 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 FAM81AQ8TBF8 368 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TEX47Q8TBZ9 253 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 APH1BQ8WW43 257 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HIST1H2ACQ93077 130 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF775Q96BV0 537 aaPredicted RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 RASD2Q96D21 266 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TSPAN32Q96QS1 320 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 IL4I1Q96RQ9 567 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TUBA1CQ9BQE3 449 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 KATNB1Q9BVA0 655 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HCAR1Q9BXC0 346 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ASPNQ9BXN1 380 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 RASSF1Q9NS23 344 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 PNPLA3Q9NST1 481 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 MED29Q9NX70 200 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ING1Q9UK53 422 aaPredicted RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF346Q9UL40 294 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ZFYVE26Q68DK2 2539 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HTR3EA5X5Y0 456 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 FAM183AA6NL82 134 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 AQP7P3A6NL99 342 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 AQP7O14520 342 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 WBP4O75554 376 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 AQP8O94778 261 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 TNFAIP8O95379 198 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 ACTL6AO96019 429 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 CPN1P15169 458 aa9.8□□□□□ -0.84
SCN9A-205ENST00000454569 HIST1H1CP16403 213 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 FKBP2P26885 142 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 RPL4P36578 427 aaKnown RBP9.8□□□□□ -0.84
SCN9A-205ENST00000454569 AGFG1P52594 562 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms