RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 TBC1D3DA0A087WVF3 549 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBC1D3IA0A087WXS9 549 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 EDDM13A0A1B0GTR0 161 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 DCDC2BA2VCK2 349 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBC1D3LB9A6J9 549 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 C11orf98E9PRG8 122 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBX19O60806 448 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 PAPLNO95428 1278 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 RAB40ALP0C0E4 278 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBC1D3HP0C7X1 549 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 AKAIN1P0CW23 69 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 VSIG10L2P0DP72 767 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 NID1P14543 1247 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 PBX2P40425 430 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 PRKXP51817 358 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 H2BFSP57053 126 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 KLHL26Q53HC5 615 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 OR7E24Q6IFN5 339 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBC1D3CQ6IPX1 549 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 SEZ6L2Q6UXD5 910 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 SFTPA1Q8IWL2 248 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TBC1D3Q8IZP1 549 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 RAB40AQ8WXH6 277 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 KISS1RQ969F8 398 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 Q96M85 177 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 CHST6Q9GZX3 395 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 SHARPINQ9H0F6 387 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 FANCFQ9NPI8 374 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 MBNL1Q9NR56 388 aaKnown RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 PIPOXQ9P0Z9 390 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 SLC27A6Q9Y2P4 619 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 PRELID3BQ9Y3B1 194 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 ZNF175Q9Y473 711 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 A0A087WV48 116 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 ARPC4-TTLL3A0A0A6YYG9 625 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 CYB5AP00167 134 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 HLA-AP01891 365 aaKnown RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 IL9P15248 144 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 AKR1C4P17516 323 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 MAPK3P27361 379 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 FRKP42685 505 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 MLC1Q15049 377 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 PRRT3Q5FWE3 981 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 LIPNQ5VXI9 398 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 ZNF761Q86XN6 746 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 CBLN2Q8IUK8 224 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 RASGRP3Q8IV61 690 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 RNF113BQ8IZP6 322 aaKnown RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 SDR16C5Q8N3Y7 309 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 GTPBP8Q8N3Z3 284 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 FGF11Q92914 225 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 CMKLR1Q99788 373 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 SLC6A7Q99884 636 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 ALG12Q9BV10 488 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 MEPEQ9NQ76 525 aaPredicted RBP8.31□□□□□ -1.08
COPB1-202ENST00000439561 ST6GALNAC2Q9UJ37 374 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 GMEB2Q9UKD1 530 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 FOXJ3Q9UPW0 622 aa8.31□□□□□ -1.08
COPB1-202ENST00000439561 TMEM82A0PJX8 343 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 URADA6NGE7 173 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 TUBAL3A6NHL2 446 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 CSTAP01040 98 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 IFNA6P05013 189 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 CSF1P09603 554 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 PVRP15151 417 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZNF28P17035 718 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 CD53P19397 219 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 P2RY2P41231 377 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ACTR1BP42025 376 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ARFIP1P53367 373 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 FXYD6P3P58550 94 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 CTXN1P60606 82 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ACTR1AP61163 376 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 FGL1Q08830 312 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ENPP2Q13822 863 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 CDNFQ49AH0 187 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 STAC2Q6ZMT1 411 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 SLC35D2Q76EJ3 337 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 PLPP7Q8NBV4 271 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 OR5T3Q8NGG3 340 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZNF563Q8TA94 476 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 C15orf40Q8WUR7 153 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 C3orf49Q96BT1 292 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 SLC25A38Q96DW6 304 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 POTEKPQ9BYX7 375 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZNF350Q9GZX5 532 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZNF230Q9UIE0 474 aaPredicted RBP8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.3□□□□□ -1.08
COPB1-202ENST00000439561 LAMA2P24043 3122 aaKnown RBP8.3□□□□□ -1.08
COPB1-202ENST00000439561 IGKV1-8A0A0C4DH67 115 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 A0A1W2PPV9 198 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 KCNAB3O43448 404 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 GPRIN2O60269 458 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 PLGP00747 810 aaPredicted RBP8.3□□□□□ -1.08
COPB1-202ENST00000439561 POU3F4P49335 361 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 ZNF136P52737 540 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 FLI1Q01543 452 aaPredicted RBP8.3□□□□□ -1.08
COPB1-202ENST00000439561 PDGFRLQ15198 375 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 OR7A5Q15622 319 aa8.3□□□□□ -1.08
COPB1-202ENST00000439561 HNRNPA1L2Q32P51 320 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms