RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MDGA1Q8NFP4 955 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 TSACCQ96A04 125 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 GPR174Q9BXC1 333 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CHRDQ9H2X0 955 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CRLF2Q9HC73 371 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CUTCQ9NTM9 273 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 GMEB2Q9UKD1 530 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SLC35A3Q9Y2D2 325 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 A0A0G2JLL6 359 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 HSPB6O14558 160 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF728P0DKX0 622 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 BLVRBP30043 206 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 OR2T2Q6IF00 324 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ACOT7LQ6ZUV0 252 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PRRT2Q7Z6L0 340 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PTRH1Q86Y79 214 aaKnown RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FAM160A2Q8N612 972 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 RAB7BQ96AH8 199 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 TMEM18Q96B42 140 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 TMPRSS5Q9H3S3 457 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 KCNIP2Q9NS61 270 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 H7BYZ3 331 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ACRP10323 421 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 MARCH8Q5T0T0 291 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SERINC5Q86VE9 423 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FAM173AQ9BQD7 235 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF251Q9BRH9 671 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SYT5O00445 386 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 TUSC2O75896 110 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 WNT7BP56706 349 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 MELKQ14680 651 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FAM74A1Q5RGS3 127 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 TEX261Q6UWH6 196 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PRSS42Q7Z5A4 293 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ARFGAP1Q8N6T3 406 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 INTS12Q96CB8 462 aaKnown RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 WDR92Q96MX6 357 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SLC2A11Q9BYW1 496 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 C12orf10Q9HB07 376 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 U3KQ87 197 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 CCDC88AQ3V6T2 1871 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 OR5H14A6NHG9 310 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 GABARAPH6UMI1 98 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PDGFBP01127 241 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 FCGR2AP12318 317 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 GZMKP49863 264 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 ISL1P61371 349 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 SOX4Q06945 474 aaPredicted RBP11.01□□□□□ -0.65
SYNPO-202ENST00000394243 C1orf61Q13536 156 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 DEFB110Q30KQ9 67 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 LPCAT3Q6P1A2 487 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 LRP10Q7Z4F1 713 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 DYNC2LI1Q8TCX1 351 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PIGQQ9BRB3 760 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 METTL9Q9H1A3 318 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 PPP1R14DQ9NXH3 145 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 RBPJLQ9UBG7 517 aa11.01□□□□□ -0.65
SYNPO-202ENST00000394243 C2orf72A6NCS6 295 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ANKRD30BLA7E2S9 258 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 AKR1C3P42330 323 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CCL14Q16627 93 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 EOGTQ5NDL2 527 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CNTN4Q8IWV2 1026 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MKXQ8IYA7 352 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 DMBX1Q8NFW5 382 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 OR52I2Q8NH67 350 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 SLC38A5Q8WUX1 472 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 PSMF1Q92530 271 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CCDC74BQ96LY2 380 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ALG12Q9BV10 488 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ZCCHC4Q9H5U6 513 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CDCP1Q9H5V8 836 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 SPHK2Q9NRA0 654 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 KNDC1Q76NI1 1749 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 LOC100289279A0A1B0GTE1 492 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 DHPSP49366 369 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 CARD18P57730 90 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 GPR85P60893 370 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 SLC36A2Q495M3 483 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ESPNLQ6ZVH7 1005 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 NANOGP1Q8N7R0 232 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 FAM3DQ96BQ1 224 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 TVP23CQ96ET8 276 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 GAREM1Q9H706 876 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 OR7C1O76099 320 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 PTGER4P35408 488 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 P2RX1P51575 399 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ATP1B3P54709 279 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ELLP55199 621 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 CLDN20P56880 219 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 RAB1AP62820 205 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 H3F3AP84243 136 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CAMK2BQ13554 666 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 EXOSC7Q15024 291 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 PHLDA2Q53GA4 152 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 EID2Q8N6I1 236 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 NEURL2Q9BR09 285 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 LMF2Q9BU23 707 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 HAPLN2Q9GZV7 340 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MED9Q9NWA0 146 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms