RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PPM1BO75688 479 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PTHP01270 115 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 BMP5P22003 454 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 MYL9P24844 172 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 P2RX3P56373 397 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 VEZF1Q14119 521 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 FDCSPQ8NFU4 85 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 NKD1Q969G9 470 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 WDR34Q96EX3 536 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 MMP28Q9H239 520 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PLEKHA1Q9HB21 404 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 RANGRFQ9HD47 186 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PLCXD1Q9NUJ7 323 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 QPCTLQ9NXS2 382 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 KLF13Q9Y2Y9 288 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 TRAV17A0A0B4J275 112 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 C12orf71A8MTZ7 269 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 F5H5K5 113 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 NOS1APO75052 506 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 MRPL33O75394 65 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 IGFBP1P08833 259 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF883P0CG24 379 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 ERP29P30040 261 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 ACVR1BP36896 505 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 RPS27P42677 84 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 MEOX1P50221 254 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SMSP52788 366 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 WBP2NLQ6ICG8 309 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SLC27A4Q6P1M0 643 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 NIPAL3Q6P499 406 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PLET1Q6UQ28 207 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 ZFP41Q8N8Y5 198 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 TSEN15Q8WW01 171 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 DNAJA4Q8WW22 397 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PMM1Q92871 262 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 S100A13Q99584 98 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SPSB2Q99619 263 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 GON7Q9BXV9 100 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 GPR87Q9BY21 358 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 FLRT3Q9NZU0 649 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 POFUT2Q9Y2G5 429 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 LTBP2Q14767 1821 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 BLACEA4D250 179 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 FARS2O95363 451 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 FGF5P12034 268 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 NID1P14543 1247 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 ENDOUP21128 410 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 HSD11B1P28845 292 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SOX2P48431 317 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 CLDN15P56746 228 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 UBE2NP61088 152 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 GPR50Q13585 617 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 TOMM34Q15785 309 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PYDC2Q56P42 97 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 LRIF1Q5T3J3 769 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 PLCZ1Q86YW0 608 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 BOLLQ8N9W6 283 aaKnown RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 OR2T33Q8NG76 320 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 SLC7A6Q92536 515 aa9.39□□□□□ -0.91
COL6A3-205ENST00000392004 NAA11Q9BSU3 229 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-205ENST00000392004 A0A075B6Q4 140 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 A0A1W2PR80 420 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 CASKO14936 926 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SLC16A7O60669 478 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 PSMA1P25786 263 aaKnown RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 PSMA3P25788 255 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 GRK5P34947 590 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 FOXF1Q12946 379 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 PRSS53Q2L4Q9 553 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SAXO2Q658L1 398 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 ARL9Q6T311 187 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 BCDIN3DQ7Z5W3 292 aaKnown RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 C19orf18Q8NEA5 215 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 VOPP1Q96AW1 172 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 LRR1Q96L50 414 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SGCZQ96LD1 299 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 KATNB1Q9BVA0 655 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SLC38A1Q9H2H9 487 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 MED29Q9NX70 200 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 GPR55Q9Y2T6 319 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 IQCMA0A1B0GVH7 501 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 TNFSF11O14788 317 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 ATP1B1P05026 303 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 CSRP1P21291 193 aaKnown RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 MAGEA5P43359 124 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 PSG6Q00889 435 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SLC3A1Q07837 685 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 RIN1Q13671 783 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 KRT77Q7Z794 578 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 NEK7Q8TDX7 302 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 APH1BQ8WW43 257 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 SSR3Q9UNL2 185 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 TRAPPC4Q9Y296 219 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 CCL27Q9Y4X3 112 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 CENPVL1A0A0U1RR11 272 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 A0A1W2PQ09 198 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 AKAP8O43823 692 aaKnown RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 LRP3O75074 770 aa9.38□□□□□ -0.91
COL6A3-205ENST00000392004 ANXA2P07355 339 aaKnown RBP9.38□□□□□ -0.91
COL6A3-205ENST00000392004 HSF1Q00613 529 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms