RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ZNF337Q9Y3M9 751 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TTC3P53804 2025 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TRBV5-4A0A0C4DH59 114 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 A0A0D9SEW6 157 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 A0A1W2PPE2 198 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 IRGMA1A4Y4 181 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 NUDT19A8MXV4 375 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 RNASET2O00584 256 aaKnown RBP10.89□□□□□ -0.67
SHMT2-201ENST00000328923 AGPAT2O15120 278 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CTDSPLO15194 276 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 KCNAB3O43448 404 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CHST10O43529 356 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 OR2F2O95006 317 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TRBC1P01850 177 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 ATF1P18846 271 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 HOXC12P31275 282 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 RPS10P46783 165 aaKnown RBP10.89□□□□□ -0.67
SHMT2-201ENST00000328923 MECP2P51608 486 aaKnown RBP10.89□□□□□ -0.67
SHMT2-201ENST00000328923 OR2F1Q13607 317 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 SCARB2Q14108 478 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 ARSJQ5FYB0 599 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CLLU1OSQ5K130 101 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CPTPQ5TA50 214 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CCDC107Q8WV48 283 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 CXorf40BQ96DE9 158 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 MRGPRX4Q96LA9 322 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TUBA4BQ9H853 241 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 ISG20L2Q9H9L3 353 aaKnown RBP10.89□□□□□ -0.67
SHMT2-201ENST00000328923 IL21RQ9HBE5 538 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TMEM100Q9NV29 134 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TIMM10BQ9Y5J6 103 aa10.89□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3DA0A087WVF3 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3IA0A087WXS9 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3EA0A087X179 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3KA0A087X1G2 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 OR5H15A6NDH6 313 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3FA6NER0 549 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 OR5H1A6NKK0 313 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3LB9A6J9 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 F5H5T6 163 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 GPR39O43194 453 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 AGR2O95994 175 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 GUSBP08236 651 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 EFNB1P98172 346 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 CNTN1Q12860 1018 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 ZNF345Q14585 488 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 C14orf28Q4W4Y0 310 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 DCAF10Q5QP82 559 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 COX20Q5RI15 118 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 C9orf64Q5T6V5 341 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3CQ6IPX1 549 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TBC1D3Q8IZP1 549 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 BEST3Q8N1M1 668 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 OR52N2Q8NGI0 321 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 OR5R1Q8NH85 324 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 NFKBIDQ8NI38 313 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TMED6Q8WW62 240 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 FGF11Q92914 225 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 SLC25A38Q96DW6 304 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 HSPA12BQ96MM6 686 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 ZFYVE1Q9HBF4 777 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 MRPS18AQ9NVS2 196 aaKnown RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 ARL15Q9NXU5 204 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 MARCH2Q9P0N8 246 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PPIL1Q9Y3C6 166 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 M0R036 132 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PRODHO43272 600 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TCF21O43680 179 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PRICKLE3O43900 615 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TSPAN3O60637 253 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 NXPH2O95156 264 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 VNN2O95498 520 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 MPZP25189 248 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 HSD3B2P26439 372 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 CD80P33681 288 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 CASRP41180 1078 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 RBM34P42696 430 aaKnown RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 RPIAP49247 311 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 CAV2P51636 162 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 LIM2P55344 173 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 SOX8P57073 446 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 IRF8Q02556 426 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 SLC10A1Q14973 349 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 FAM189A2Q15884 450 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 LY6G6FQ5SQ64 297 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 SCN4BQ8IWT1 228 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 ZNF321PQ8N8H1 164 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 IFI44Q8TCB0 444 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 LCN9Q8WX39 176 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 TFGQ92734 400 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-201ENST00000328923 ECHDC3Q96DC8 303 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 MYEOVQ96EZ4 313 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 CCDC74BQ96LY2 380 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 C5orf34Q96MH7 638 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PLEKHA1Q9HB21 404 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 SPHK2Q9NRA0 654 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 VPS29Q9UBQ0 182 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PRODH2Q9UF12 536 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 PCDHB8Q9UN66 801 aa10.88□□□□□ -0.67
SHMT2-201ENST00000328923 RANBP2P49792 3224 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms