RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 N4BP2Q86UW6 1770 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 FAM240BA0A1B0GVZ2 78 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ARHGEF35A5YM69 484 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 OR52A4PA6NMU1 304 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 H0YC42 278 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 K7N7A8 449 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 FOXE1O00358 373 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 RS1O15537 224 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 SNAPINO95295 136 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PNMTP11086 282 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 NCF2P19878 526 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 GALP22466 123 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 AQP1P29972 269 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 UGT1A5P35504 534 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 LEPP41159 167 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 SUCLG1P53597 346 aaKnown RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 TIMM10P62072 90 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 FGL1Q08830 312 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 NCBP1Q09161 790 aaKnown RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 BST1Q10588 318 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CUL1Q13616 776 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 GANABQ14697 944 aaKnown RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ARL6IP1Q15041 203 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 RCN1Q15293 331 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 IL17AQ16552 155 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 C2orf83Q53S99 150 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 BEND3Q5T5X7 828 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ATL3Q6DD88 541 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 UNQ9370/PRO34162Q6UXP9 181 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 Q6ZPB1 254 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 GDPD3Q7L5L3 318 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 FAM228AQ86W67 206 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CLEC4FQ8N1N0 589 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 UBE2J2Q8N2K1 259 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC71LQ8N9Z2 235 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 AGR3Q8TD06 166 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 C7orf33Q8WU49 177 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ANP32BQ92688 251 aaKnown RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 RASD2Q96D21 266 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 AMDHD1Q96NU7 426 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 TGM7Q96PF1 710 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CCNL2Q96S94 520 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PKIBQ9C010 78 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CRLF2Q9HC73 371 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 RRAGDQ9NQL2 400 aaPredicted RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ABCB10Q9NRK6 738 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 SMOXQ9NWM0 555 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 RAB20Q9NX57 234 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 SIGLEC8Q9NYZ4 499 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PIPOXQ9P0Z9 390 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PCSK1NQ9UHG2 260 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PHF11Q9UIL8 331 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 BTNL2Q9UIR0 455 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CDH9Q9ULB4 789 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 ERVW-1Q9UQF0 538 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 AK6Q9Y3D8 172 aaKnown RBP2.31□□□□□ -2.04
HMGB1-201ENST00000326004 TTC21BQ7Z4L5 1316 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 TTC21AQ8NDW8 1320 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 UNC80Q8N2C7 3258 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 BCL9O00512 1426 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CRB1P82279 1406 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC141Q6ZP82 1450 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 PRXQ9BXM0 1461 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 MBD5Q9P267 1494 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 NRXN1Q9ULB1 1477 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 AKAP12Q02952 1782 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 TUBGCP6Q96RT7 1819 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 MYO5BQ9ULV0 1848 aa2.31□□□□□ -2.04
HMGB1-201ENST00000326004 LRRIQ4A6NIV6 560 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PCP4L1A6NKN8 68 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 BOLA2-SMG1P6H3BVE0 249 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 KIF2AO00139 706 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 DNALI1O14645 258 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 HCRTR1O43613 425 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 CACNG3O60359 315 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 SLC2A3P11169 496 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 DBTP11182 482 aaKnown RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 IMPDH1P20839 514 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 FUT3P21217 361 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 ANXA13P27216 316 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 LAP3P28838 519 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 FGF9P31371 208 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 P2RY1P47900 373 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 DAP3P51398 398 aaKnown RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PRMT2P55345 433 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 GNB2P62879 340 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 SRSF5Q13243 272 aaKnown RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 TRIM16LQ309B1 348 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 BCL7AQ4VC05 210 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 C1orf185Q5T7R7 199 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 ARMC12Q5T9G4 340 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 PRAMEF20Q5VT98 475 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 CDR2LQ86X02 465 aaPredicted RBP2.3□□□□□ -2.04
HMGB1-201ENST00000326004 VRK2Q86Y07 508 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 NECAB1Q8N987 351 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 OR6C4Q8NGE1 309 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 OR9K2Q8NGE7 335 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 OR56B4Q8NH76 319 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 OR1F12Q8NHA8 337 aa2.3□□□□□ -2.04
HMGB1-201ENST00000326004 RAB3IL1Q8TBN0 382 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms