RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 ARPC5LQ9BPX5 153 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CDHR4A6H8M9 788 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 G3V3Y1 287 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MSTNO14793 375 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 RAP2BP61225 183 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MFAP5Q13361 173 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 EPGNQ6UW88 154 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 KDF1Q8NAX2 398 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 UBTD2Q8WUN7 234 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CCDC74BQ96LY2 380 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PAAF1Q9BRP4 392 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM246Q9BRR3 403 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 NMES1Q9C002 83 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PCDHAC1Q9H158 963 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PRSS16Q9NQE7 514 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 GLTPQ9NZD2 209 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TPRP12270 2363 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 GOSR2O14653 212 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TNFRSF10CO14798 259 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 P2RX6O15547 441 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CYC1P08574 325 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PVRP15151 417 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PRKAR1BP31321 381 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 NDUFA6P56556 154 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MAT1AQ00266 395 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PIGFQ07326 219 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PCGF3Q3KNV8 242 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TSEN54Q7Z6J9 526 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 LSM14AQ8ND56 463 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ADAMTS19Q8TE59 1207 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 PCDHGA7Q9Y5G6 932 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 FABP6P51161 128 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM240Q5SV17 173 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF468Q5VIY5 522 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 H2BFWTQ7Z2G1 175 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 SLC36A1Q7Z2H8 476 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 KANSL1Q7Z3B3 1105 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 BCORP1Q8N888 145 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 OR56B1Q8NGI3 324 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 SPPL3Q8TCT6 385 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ELF4Q99607 663 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 EGLN3Q9H6Z9 239 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 INPP5EQ9NRR6 644 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 RIMS3Q9UJD0 308 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ANTXRLA6NF34 631 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ERVPABLB-1P60509 514 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MFGE8Q08431 387 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ATP6AP1Q15904 470 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ZBED5Q49AG3 693 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 FAM69AQ5T7M9 428 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TIFABQ6ZNK6 161 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 HSD11B1LQ7Z5J1 315 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 C17orf78Q8N4C9 275 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 FITM2Q8N6M3 262 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 OR51A2Q8NGJ7 313 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 GRAMD2BQ96HH9 432 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CHRNA9Q9UGM1 479 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 DICER1Q9UPY3 1922 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 NRAPQ86VF7 1730 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TNFSF12O43508 249 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 AKAIN1P0CW23 69 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ETV6P41212 452 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 GPR12P47775 334 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 BAXQ07812 192 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CLN3Q13286 438 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 CCDC58Q4VC31 144 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TXNRD3NBQ6F5E7 133 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM108Q6UXF1 575 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ESPNLQ6ZVH7 1005 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 SERPINA12Q8IW75 414 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 OR2T6Q8NHC8 308 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 DYNLRB2Q8TF09 96 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 ZNF775Q96BV0 537 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 MRPS24Q96EL2 167 aaKnown RBP5.69□□□□□ -1.5
SCN1A-217ENST00000637988 DMRTB1Q96MA1 342 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 FGFBP2Q9BYJ0 223 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 FOXQ1Q9C009 403 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 EHFQ9NZC4 300 aa5.69□□□□□ -1.5
SCN1A-217ENST00000637988 TRAV36DV7A0A075B6V5 113 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 RAD1O60671 282 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CPEP16870 476 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 CKMT2P17540 419 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 GLRA1P23415 457 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 IDH3GP51553 393 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 FLI1Q01543 452 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 ELAVL1Q15717 326 aaKnown RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TAF9Q16594 264 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PAGE3Q5JUK9 113 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SFTPA2Q8IWL1 248 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SFTPA1Q8IWL2 248 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TMIGD2Q96BF3 282 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 PFDN5Q99471 154 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 MYOZ1Q9NP98 299 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.68□□□□□ -1.5
SCN1A-217ENST00000637988 A0A1B0GUL6 1792 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 A0A087WZY1 265 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 C20orf202A1L168 122 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 TMEM212A6NML5 194 aa5.68□□□□□ -1.5
SCN1A-217ENST00000637988 SEC14L6B5MCN3 397 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms