RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 PMS2P3Q13401 168 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 C1DQ13901 141 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 FXNQ16595 210 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 TRPM8Q7Z2W7 1104 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 ARHGAP24Q8N264 748 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 ZIC4Q8N9L1 334 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 RBM15BQ8NDT2 890 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 ZC3HAV1LQ96H79 300 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 MOGAT1Q96PD6 335 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 ZNF385AQ96PM9 386 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 AMBRA1Q9C0C7 1298 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 RASSF1Q9NS23 344 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 MRPL39Q9NYK5 338 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 HEATR1Q9H583 2144 aaKnown RBP18.31■□□□□ 0.52
CLN3-240ENST00000631023 CREBBPQ92793 2442 aa18.31■□□□□ 0.52
CLN3-240ENST00000631023 IGHV3-9P01782 118 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 LTBQ06643 244 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 KDM8Q8N371 416 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 LURAP1Q96LR2 239 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 FNDC11Q9BVV2 318 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 POLDIP3Q9BY77 421 aaKnown RBP18.3■□□□□ 0.52
CLN3-240ENST00000631023 NANSQ9NR45 359 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 SEC14L4Q9UDX3 406 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 MALT1Q9UDY8 824 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 OR6C65A6NJZ3 312 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 HIST1H2ABP04908 130 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 FAPQ12884 760 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 ZNF74Q16587 644 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 HIST3H2AQ7L7L0 130 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 BHLHA15Q7RTS1 189 aaPredicted RBP18.3■□□□□ 0.52
CLN3-240ENST00000631023 CYP4Z1Q86W10 505 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 EPHX4Q8IUS5 362 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 NKAIN4Q8IVV8 208 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 POMGNT2Q8NAT1 580 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 HIST1H2ACQ93077 130 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 S100PBPQ96BU1 408 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 CLEC4MQ9H2X3 399 aaPredicted RBP18.3■□□□□ 0.52
CLN3-240ENST00000631023 SLCO5A1Q9H2Y9 848 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 FKRPQ9H9S5 495 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 A4GNTQ9UNA3 340 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 SNX13Q9Y5W8 968 aa18.3■□□□□ 0.52
CLN3-240ENST00000631023 TEX15Q9BXT5 2789 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 KPNA4O00629 521 aaPredicted RBP18.29■□□□□ 0.52
CLN3-240ENST00000631023 OR6A2O95222 327 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 CH25HO95992 272 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 MT-ND1P03886 318 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 T-ENOLP0DO92 83 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 CRYGSP22914 178 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 IGHV1-2P23083 117 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 MSX2P35548 267 aaPredicted RBP18.29■□□□□ 0.52
CLN3-240ENST00000631023 ABHD12BQ7Z5M8 362 aaPredicted RBP18.29■□□□□ 0.52
CLN3-240ENST00000631023 UEVLDQ8IX04 471 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 OR5J2Q8NH18 312 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 TMEM239Q8WW34 195 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 HSD17B8Q92506 261 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 NSMCE2Q96MF7 247 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 B3GAT1Q9P2W7 334 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 MED31Q9Y3C7 131 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 FAM32AQ9Y421 112 aaKnown RBP18.29■□□□□ 0.52
CLN3-240ENST00000631023 POLQO75417 2590 aa18.29■□□□□ 0.52
CLN3-240ENST00000631023 LRBAP50851 2863 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 HTR3EA5X5Y0 456 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 LRRN3E7EW58 273 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 MS4A18H0YCH9 400 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 AKAP8O43823 692 aaKnown RBP18.28■□□□□ 0.52
CLN3-240ENST00000631023 LYZL6O75951 148 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 KRT33AO76009 404 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 IGF2P01344 180 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 COX5AP20674 150 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 YAP1P46937 504 aaKnown RBP18.28■□□□□ 0.52
CLN3-240ENST00000631023 CLDN17P56750 224 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 KRTAP10-9P60411 292 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 PUDPQ08623 228 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 FOXD4Q12950 439 aaPredicted RBP18.28■□□□□ 0.52
CLN3-240ENST00000631023 TSC22D1Q15714 1073 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 MS4A18Q3C1V0 323 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 RINLQ6ZS11 566 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 OFCC1Q8IZS5 231 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 ZNF433Q8N7K0 673 aaPredicted RBP18.28■□□□□ 0.52
CLN3-240ENST00000631023 TMEM255BQ8WV15 326 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 C1orf21Q9H246 121 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 SLC7A10Q9NS82 523 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 TAS2R16Q9NYV7 291 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 ZNF229Q9UJW7 825 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 RCE1Q9Y256 329 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 NOX1Q9Y5S8 564 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 ENPP4Q9Y6X5 453 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 ROS1P08922 2347 aa18.28■□□□□ 0.52
CLN3-240ENST00000631023 CIB4A0PJX0 185 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 PLPP3O14495 311 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 UMPSP11172 480 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 AHCYP23526 432 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 DNAJA1P31689 397 aaKnown RBP18.27■□□□□ 0.52
CLN3-240ENST00000631023 TGFBR3Q03167 851 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 TRAM2Q15035 370 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 TSPO2Q5TGU0 170 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 NIPAL3Q6P499 406 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 C22orf34Q6ZV56 151 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 SSX8Q7RTT4 187 aa18.27■□□□□ 0.52
CLN3-240ENST00000631023 P2RY8Q86VZ1 359 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms