RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 PNPP00491 289 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 C1QCP02747 245 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 TFP02787 698 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 HOXB1P14653 301 aaPredicted RBP12.64□□□□□ -0.39
PNKP-218ENST00000625299 COL8A2P25067 703 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 ALDH3B1P43353 468 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 LIMS1P48059 325 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 CLDN17P56750 224 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 RNF130Q86XS8 419 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 GPR137CQ8N3F9 429 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 KIF18AQ8NI77 898 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 UBLCP1Q8WVY7 318 aaPredicted RBP12.64□□□□□ -0.39
PNKP-218ENST00000625299 MRPL24Q96A35 216 aaKnown RBP12.64□□□□□ -0.39
PNKP-218ENST00000625299 NEURL3Q96EH8 262 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 SLC6A7Q99884 636 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 TXLNGYQ9BZA5 131 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 LINC00470Q9BZP3 86 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 SLC38A1Q9H2H9 487 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 ZNF275Q9NSD4 429 aaPredicted RBP12.64□□□□□ -0.39
PNKP-218ENST00000625299 RLIMQ9NVW2 624 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 RASD1Q9Y272 281 aa12.64□□□□□ -0.39
PNKP-218ENST00000625299 A8MVM7 634 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 TMEM229AB2RXF0 380 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 SLC43A1O75387 559 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 ACHEP22303 614 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 GTF2E2P29084 291 aaKnown RBP12.63□□□□□ -0.39
PNKP-218ENST00000625299 ARRB2P32121 409 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 SEC24CP53992 1094 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 COPZ1P61923 177 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 EMX2Q04743 252 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 MAD2L1BPQ15013 274 aaPredicted RBP12.63□□□□□ -0.39
PNKP-218ENST00000625299 GSTA3Q16772 222 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 MSMPQ1L6U9 139 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 CEACAM16Q2WEN9 425 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 SLC9B1Q4ZJI4 515 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 PDLIM3Q53GG5 364 aaPredicted RBP12.63□□□□□ -0.39
PNKP-218ENST00000625299 PRR31Q5SQ13 230 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 ANXA8L1Q5VT79 327 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 C1orf140Q5VVS0 124 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 USP43Q70EL4 1123 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 VPS37AQ8NEZ2 397 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 OR8J2Q8NGG1 315 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 RDH5Q92781 318 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 YIPF5Q969M3 257 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 SLC25A36Q96CQ1 311 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 APOPT1Q96IL0 206 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 TRNT1Q96Q11 434 aaKnown RBP12.63□□□□□ -0.39
PNKP-218ENST00000625299 SUCNR1Q9BXA5 334 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 MS4A5Q9H3V2 200 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 SLC17A7Q9P2U7 560 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 FZR1Q9UM11 496 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 NOX1Q9Y5S8 564 aa12.63□□□□□ -0.39
PNKP-218ENST00000625299 TRAV20A0A0B4J274 112 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 PRSS51A0A1B0GVH4 220 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 TMPRSS2O15393 492 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 AVPP01185 164 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 DBIP07108 87 aaKnown RBP12.62□□□□□ -0.39
PNKP-218ENST00000625299 NR2F1P10589 423 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 PNMTP11086 282 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 CD79AP11912 226 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 ZNF43P17038 809 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 ADRA2CP18825 462 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 NCF2P19878 526 aaPredicted RBP12.62□□□□□ -0.39
PNKP-218ENST00000625299 NR4A1P22736 598 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 ARFIP2P53365 341 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 DEFA6Q01524 100 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 GKAP1Q5VSY0 366 aaPredicted RBP12.62□□□□□ -0.39
PNKP-218ENST00000625299 ATG16L1Q676U5 607 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 WBP2NLQ6ICG8 309 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 LRRC74BQ6ZQY2 392 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 C1orf229Q6ZS94 237 aaPredicted RBP12.62□□□□□ -0.39
PNKP-218ENST00000625299 ZNF440Q8IYI8 595 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 BPIFB2Q8N4F0 458 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 TEX29Q8N6K0 151 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 IL17RDQ8NFM7 739 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 ZNF837Q96EG3 531 aaPredicted RBP12.62□□□□□ -0.39
PNKP-218ENST00000625299 MS4A3Q96HJ5 214 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 RACGAP1Q9H0H5 632 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 GPR35Q9HC97 309 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 TRRAPQ9Y4A5 3859 aa12.62□□□□□ -0.39
PNKP-218ENST00000625299 A0A1W2PPW3 197 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 RPL36A-HNRNPH2H7BZ11 118 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 AHSA1O95433 338 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 BCL10O95999 233 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 HLA-HP01893 362 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 TFPTP0C1Z6 253 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 NAT2P11245 290 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 RPS4Y1P22090 263 aaKnown RBP12.61□□□□□ -0.39
PNKP-218ENST00000625299 MYBPC1Q00872 1141 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 POU3F1Q03052 451 aaPredicted RBP12.61□□□□□ -0.39
PNKP-218ENST00000625299 C1DQ13901 141 aaKnown RBP12.61□□□□□ -0.39
PNKP-218ENST00000625299 PDCD2Q16342 344 aaPredicted RBP12.61□□□□□ -0.39
PNKP-218ENST00000625299 ALKBH6Q3KRA9 238 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 SPANXN4Q5MJ08 99 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 REP15Q6BDI9 236 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 ZNF836Q6ZNA1 936 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 LRP11Q86VZ4 500 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 VRK2Q86Y07 508 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 PEX5LQ8IYB4 626 aa12.61□□□□□ -0.39
PNKP-218ENST00000625299 PNPT1Q8TCS8 783 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms