RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ZIC4Q8N9L1 334 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 ADAMTS16Q8TE57 1224 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 HSD17B8Q92506 261 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 MYLK2Q9H1R3 596 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 SLCO5A1Q9H2Y9 848 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 SLC7A10Q9NS82 523 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 TAS2R16Q9NYV7 291 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 GMPR2Q9P2T1 348 aaKnown RBP14.09□□□□□ -0.15
BRCA1-228ENST00000618469 BAG5Q9UL15 447 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 SH3GLB1Q9Y371 365 aa14.09□□□□□ -0.15
BRCA1-228ENST00000618469 NSD1Q96L73 2696 aaPredicted RBP14.09□□□□□ -0.15
BRCA1-228ENST00000618469 CSPG4Q6UVK1 2322 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 RAI1Q7Z5J4 1906 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 ELOVL7A1L3X0 281 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 DYNC1I1O14576 645 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 IFNA14P01570 189 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 ITGA5P08648 1049 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 NQO1P15559 274 aaKnown RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 FOXG1P55316 489 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 PPA1Q15181 289 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 SEZ6L2Q6UXD5 910 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 WDR88Q6ZMY6 472 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 DEF8Q6ZN54 512 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF704Q6ZNC4 412 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 CREB3L2Q70SY1 520 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 TSPYL5Q86VY4 417 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 SLC15A3Q8IY34 581 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 KDM8Q8N371 416 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 C10orf53Q8N6V4 93 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 ALKBH3Q96Q83 286 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 USB1Q9BQ65 265 aaKnown RBP14.08□□□□□ -0.16
BRCA1-228ENST00000618469 TMEM43Q9BTV4 400 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 EFCAB1Q9HAE3 211 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 SLC7A7Q9UM01 511 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 AP3M1Q9Y2T2 418 aa14.08□□□□□ -0.16
BRCA1-228ENST00000618469 TRAPPC13A5PLN9 417 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 KPNA4O00629 521 aaPredicted RBP14.07□□□□□ -0.16
BRCA1-228ENST00000618469 NME4O00746 187 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 BGLAPP02818 100 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 ZNF43P17038 809 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 SELENOPP49908 381 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 LIPEQ05469 1076 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 MFSD13AQ14CX5 517 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 CYBRD1Q53TN4 286 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 TIMM23BQ5SRD1 257 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 NIPAL3Q6P499 406 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 HACD2Q6Y1H2 254 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 KRTAP1-3Q8IUG1 177 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 EPHX4Q8IUS5 362 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 CIARTQ8N365 385 aaPredicted RBP14.07□□□□□ -0.16
BRCA1-228ENST00000618469 MBD6Q96DN6 1003 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 MUCL1Q96DR8 90 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 CMTM5Q96DZ9 223 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 TPD52L3Q96J77 140 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 MOGAT1Q96PD6 335 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 ASPNQ9BXN1 380 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 PCDHAC1Q9H158 963 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 NGBQ9NPG2 151 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 B3GAT1Q9P2W7 334 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 B3GALT5Q9Y2C3 310 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 CORINQ9Y5Q5 1042 aa14.07□□□□□ -0.16
BRCA1-228ENST00000618469 PRR14LQ5THK1 2151 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 OR5H1A6NKK0 313 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 LRRN3E7EW58 273 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 PDLIM1O00151 329 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 SMAD7O15105 426 aaKnown RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 SHOX2O60902 331 aaPredicted RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 KRT33AO76009 404 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 LYPD3O95274 346 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 PLAUP00749 431 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 THY1P04216 161 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 HEXAP06865 529 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 HOXC12P31275 282 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 KDELR2P33947 212 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 CLDN17P56750 224 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 TAS2R41P59536 307 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 LGALS3BPQ08380 585 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 C1DQ13901 141 aaKnown RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 C8orf82Q6P1X6 216 aaPredicted RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 H1FNTQ75WM6 255 aaPredicted RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 POMGNT2Q8NAT1 580 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 ADPRHL1Q8NDY3 354 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 OR6S1Q8NH40 331 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 OR52N5Q8NH56 324 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 OXGR1Q96P68 337 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 HOPXQ9BPY8 73 aaPredicted RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 ALG2Q9H553 416 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 ESRP2Q9H6T0 727 aaKnown RBP14.06□□□□□ -0.16
BRCA1-228ENST00000618469 RNF115Q9Y4L5 304 aa14.06□□□□□ -0.16
BRCA1-228ENST00000618469 A0A1W2PR80 420 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 GSTA4O15217 222 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 CLOCKO15516 846 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 CD3EP07766 207 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 CDH2P19022 906 aaPredicted RBP14.05□□□□□ -0.16
BRCA1-228ENST00000618469 CD53P19397 219 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 MPGP29372 298 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 PRDX6P30041 224 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 OR1E2P47887 323 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 GSK3BP49841 420 aa14.05□□□□□ -0.16
BRCA1-228ENST00000618469 BSPH1Q075Z2 132 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms