RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PDE5AO76074 875 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 GPIP06744 558 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 HNRNPCL4P0DMR1 293 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 STX1BP61266 288 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 C3orf36Q3SXR2 165 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 LIN52Q52LA3 116 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 OTUD3Q5T2D3 398 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-212ENST00000597995 RNF220Q5VTB9 566 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 AAED1Q7RTV5 226 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 COMTD1Q86VU5 262 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 ZIC4Q8N9L1 334 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 DYDC1Q8WWB3 177 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 MAGEB18Q96M61 343 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF317Q96PQ6 595 aaPredicted RBP10.9□□□□□ -0.66
TRIM28-212ENST00000597995 SLC38A2Q96QD8 506 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 KCNS3Q9BQ31 491 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 KATNB1Q9BVA0 655 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 SPATA9Q9BWV2 254 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF385DQ9H6B1 395 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 MOV10Q9HCE1 1003 aaKnown RBP10.9□□□□□ -0.66
TRIM28-212ENST00000597995 BCL2L10Q9HD36 194 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 CA10Q9NS85 328 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 TMEM45AQ9NWC5 275 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 CALML5Q9NZT1 146 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 GMEB1Q9Y692 573 aa10.9□□□□□ -0.66
TRIM28-212ENST00000597995 SVEP1Q4LDE5 3571 aa10.9□□□□□ -0.67
TRIM28-212ENST00000597995 IGHV1-18A0A0C4DH31 117 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 IGHV4-61A0A0C4DH41 118 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 OR6C65A6NJZ3 312 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 FRS3O43559 492 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 TGFAP01135 160 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 CRYAAP02489 173 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 UQCRBP14927 111 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF23P17027 643 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 ATP4BP51164 291 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 HOXC5Q00444 222 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 BNIP2Q12982 314 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 FADDQ13158 208 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 GNA13Q14344 377 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 EFNB3Q15768 340 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 TBRG1Q3YBR2 411 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 IQCCQ4KMZ1 466 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 AGKQ53H12 422 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 DLEU7Q6UYE1 221 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 IL17RELQ6ZVW7 336 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 SERPINA11Q86U17 422 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF440Q8IYI8 595 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 GOLGA6L1Q8N7Z2 621 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 OR9K2Q8NGE7 335 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 STON2Q8WXE9 905 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF385AQ96PM9 386 aaKnown RBP10.89□□□□□ -0.67
TRIM28-212ENST00000597995 PLK3Q9H4B4 646 aa10.89□□□□□ -0.67
TRIM28-212ENST00000597995 CRNNQ9UBG3 495 aaPredicted RBP10.89□□□□□ -0.67
TRIM28-212ENST00000597995 ANK2Q01484 3957 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 ARPC4-TTLL3A0A0A6YYG9 625 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 LIPT2A6NK58 231 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 AQP7P3A6NL99 342 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 EDF1O60869 148 aaKnown RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 NPIPB7O75200 414 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 KRT33AO76009 404 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 ARAFP10398 606 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 HOXB1P14653 301 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 CDH2P19022 906 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 GIFP27352 417 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 PPOXP50336 477 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 P2RY4P51582 365 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 CEACAM7Q14002 265 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 ADIPOQQ15848 244 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 ADRM1Q16186 407 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 HIKESHIQ53FT3 197 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 PRAMEF8Q5VWM4 474 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 PRAMEF7Q5VXH5 474 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 TMEM225Q6GV28 225 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 WBP2NLQ6ICG8 309 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 ANKRD16Q6P6B7 361 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 SLC46A3Q7Z3Q1 461 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 CADM2Q8N3J6 435 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 TMEM99Q8N816 258 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 FAM169BQ8N8A8 192 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 OR1K1Q8NGR3 316 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 NFKBIDQ8NI38 313 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 MAGEE2Q8TD90 523 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 C3orf49Q96BT1 292 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 VRK1Q99986 396 aaPredicted RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 BPESC1Q9GZL8 116 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 RAB1BQ9H0U4 201 aa10.88□□□□□ -0.67
TRIM28-212ENST00000597995 THUMPD1Q9NXG2 353 aaKnown RBP10.88□□□□□ -0.67
TRIM28-212ENST00000597995 VSTM5A8MXK1 200 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 TMEM229AB2RXF0 380 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 ZNF587BE7ETH6 402 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 TPST1O60507 370 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 AKR7A3O95154 331 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 VAMP5O95183 116 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 IGLV1-44P01699 117 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 OR4A8P0C604 315 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 GPX2P18283 190 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 CXCR1P25024 350 aa10.87□□□□□ -0.67
TRIM28-212ENST00000597995 IDH3GP51553 393 aaPredicted RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 UBE2NP61088 152 aaKnown RBP10.87□□□□□ -0.67
TRIM28-212ENST00000597995 SRSF2Q01130 221 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms