RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 MRPL39Q9NYK5 338 aaKnown RBP12.86□□□□□ -0.35
VRK3-206ENST00000594090 CD300AQ9UGN4 299 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 RPS6KA6Q9UK32 745 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 A4GNTQ9UNA3 340 aa12.86□□□□□ -0.35
VRK3-206ENST00000594090 DEFB108AA8MXU0 73 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 KPNA4O00629 521 aaPredicted RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 ZNF43P17038 809 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 CALB2P22676 271 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 RBM34P42696 430 aaKnown RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 IL1RL1Q01638 556 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 FAPQ12884 760 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 ZNF74Q16587 644 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 TSPO2Q5TGU0 170 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 FKBP9P1Q75LS8 142 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 ZNF433Q8N7K0 673 aaPredicted RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 RBM15BQ8NDT2 890 aaKnown RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 TMEM255BQ8WV15 326 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 FKRPQ9H9S5 495 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 MEPEQ9NQ76 525 aaPredicted RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 SLC7A10Q9NS82 523 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 DCAF13Q9NV06 445 aaKnown RBP12.85□□□□□ -0.35
VRK3-206ENST00000594090 TAS2R16Q9NYV7 291 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 UPB1Q9UBR1 384 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 MAGEL2Q9UJ55 1249 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 SNX13Q9Y5W8 968 aa12.85□□□□□ -0.35
VRK3-206ENST00000594090 APCP25054 2843 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 LOC102725191A0A1B0GVB3 256 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 B2RBV5 119 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 MS4A18H0YCH9 400 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 J3KTA2 159 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 PDLIM1O00151 329 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 TRAF3IP2O43734 574 aaPredicted RBP12.84□□□□□ -0.35
VRK3-206ENST00000594090 GMNNO75496 209 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 HPRP00739 348 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 ITGA5P08648 1049 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 SELENOPP49908 381 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 UGT2B15P54855 530 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 CLDN17P56750 224 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 ST3GAL3Q11203 375 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 PMS2P3Q13401 168 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 C1DQ13901 141 aaKnown RBP12.84□□□□□ -0.35
VRK3-206ENST00000594090 MS4A18Q3C1V0 323 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 SPATS1Q496A3 300 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 NIPAL3Q6P499 406 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 CDC20BQ86Y33 519 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 OFCC1Q8IZS5 231 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 POMGNT2Q8NAT1 580 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 OR5J2Q8NH18 312 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 TMEM239Q8WW34 195 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 USB1Q9BQ65 265 aaKnown RBP12.84□□□□□ -0.35
VRK3-206ENST00000594090 GORASP2Q9H8Y8 452 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 SAMD4AQ9UPU9 718 aaKnown RBP12.84□□□□□ -0.35
VRK3-206ENST00000594090 RCE1Q9Y256 329 aa12.84□□□□□ -0.35
VRK3-206ENST00000594090 CENPEQ02224 2701 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 ITPR2Q14571 2701 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 ENO4A6NNW6 628 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 PLPP3O14495 311 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 PRSS23O95084 383 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 CH25HO95992 272 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 MT-ND1P03886 318 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 T-ENOLP0DO92 83 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 FUT4P22083 530 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 DNAJA1P31689 397 aaKnown RBP12.83□□□□□ -0.36
VRK3-206ENST00000594090 IFNA8P32881 189 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 MSX2P35548 267 aaPredicted RBP12.83□□□□□ -0.36
VRK3-206ENST00000594090 YAP1P46937 504 aaKnown RBP12.83□□□□□ -0.36
VRK3-206ENST00000594090 FOXG1P55316 489 aaPredicted RBP12.83□□□□□ -0.36
VRK3-206ENST00000594090 PUDPQ08623 228 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 TAB1Q15750 504 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 RINLQ6ZS11 566 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 SLC46A3Q7Z3Q1 461 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 CDH24Q86UP0 819 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 WFDC8Q8IUA0 241 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 UEVLDQ8IX04 471 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 FAM86B1Q8N7N1 296 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 PFN4Q8NHR9 129 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 PIK3IP1Q96FE7 263 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 HS6ST2Q96MM7 605 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 NANSQ9NR45 359 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 ZNF229Q9UJW7 825 aa12.83□□□□□ -0.36
VRK3-206ENST00000594090 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.82□□□□□ -0.36
VRK3-206ENST00000594090 A0A1W2PPR1 153 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 CIB4A0PJX0 185 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 FFAR1O14842 300 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 ARPC2O15144 300 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 RAD51DO75771 328 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 ZNF432O94892 652 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 IGF2P01344 180 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 ASAH2BP0C7U1 165 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 ADORA3P0DMS8 318 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 HLA-DOBP13765 273 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 LOXP28300 417 aaPredicted RBP12.82□□□□□ -0.36
VRK3-206ENST00000594090 POU3F1Q03052 451 aaPredicted RBP12.82□□□□□ -0.36
VRK3-206ENST00000594090 FOXD4Q12950 439 aaPredicted RBP12.82□□□□□ -0.36
VRK3-206ENST00000594090 STK11Q15831 433 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 TRPM8Q7Z2W7 1104 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 LRRC17Q8N6Y2 441 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 HSD17B8Q92506 261 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 NRGNQ92686 78 aa12.82□□□□□ -0.36
VRK3-206ENST00000594090 NSMCE2Q96MF7 247 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms