RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ACOT7O00154 380 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 TFECO14948 347 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 P2RY4P51582 365 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 NUP107P57740 925 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 CTXN1P60606 82 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 FOXK2Q01167 660 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 SNAPC1Q16533 368 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 SGCBQ16585 318 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF362Q5T0B9 420 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 C19orf48Q6RUI8 117 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 KDF1Q8NAX2 398 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 RHOXF1Q8NHV9 184 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 FBLIM1Q8WUP2 373 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 ADGRG7Q96K78 797 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 ERMAPQ96PL5 475 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 UCN2Q96RP3 112 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 APOL4Q9BPW4 351 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 MRPL39Q9NYK5 338 aaKnown RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 TLX2O43763 284 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 SLC6A6P31641 620 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 IL18R1Q13478 541 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 PTCHD4Q6ZW05 846 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 H1FNTQ75WM6 255 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 GHDCQ8N2G8 530 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 LNX2Q8N448 690 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 FAM98AQ8NCA5 519 aaKnown RBP22.5■■□□□ 1.19
SHMT1-207ENST00000580002 ASPNQ9BXN1 380 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 LDAHQ9H6V9 325 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 NRIP3Q9NQ35 241 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 QPCTLQ9NXS2 382 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 ALKBH4Q9NXW9 302 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 PCDHGB7Q9Y5F8 929 aa22.5■■□□□ 1.19
SHMT1-207ENST00000580002 SURF4O15260 269 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 CLK1P49759 484 aaKnown RBP22.49■■□□□ 1.19
SHMT1-207ENST00000580002 CDC42P60953 191 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 CASP12Q6UXS9 341 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 RASD2Q96D21 266 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF845Q96IR2 970 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-207ENST00000580002 Q96M85 177 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 RHNO1Q9BSD3 238 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 CHST11Q9NPF2 352 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 IMPAD1Q9NX62 359 aa22.49■■□□□ 1.19
SHMT1-207ENST00000580002 NPIPA5E9PKD4 350 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 RNF13O43567 381 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 CXCL13O43927 109 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ENPP1P22413 925 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 PCYT1AP49585 367 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 CLDN18P56856 261 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 PRPS1P60891 318 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 HSF1Q00613 529 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 TOP3AQ13472 1001 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-207ENST00000580002 RPL13AP3Q6NVV1 102 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 DPY19L2P2Q6ZN68 376 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF786Q8N393 782 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 EXD3Q8N9H8 876 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 NEIL3Q8TAT5 605 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 SGCDQ92629 289 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ABTB1Q969K4 478 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-207ENST00000580002 PRORYQ9H606 182 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 AMBNQ9NP70 447 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ZMIZ1Q9ULJ6 1067 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 NPIPA1Q9UND3 350 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 TRAPPC4Q9Y296 219 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ACACBO00763 2458 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 TRGV5A0A0B4J1U4 118 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 FAM183AA6NL82 134 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 FZD7O75084 574 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 PMS2P2O95744 297 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 GTF2E2P29084 291 aaKnown RBP22.48■■□□□ 1.19
SHMT1-207ENST00000580002 HBMQ6B0K9 141 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 SIAH3Q8IW03 269 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 SETD9Q8NE22 299 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 OR4K13Q8NH42 304 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 OR10D3Q8NH80 312 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ZPLD1Q8TCW7 415 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ARHGAP9Q9BRR9 750 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 EXO5Q9H790 373 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 MED20Q9H944 212 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 KLHL13Q9P2N7 655 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 B3GAT1Q9P2W7 334 aa22.48■■□□□ 1.19
SHMT1-207ENST00000580002 ZNF346Q9UL40 294 aaKnown RBP22.48■■□□□ 1.19
SHMT1-207ENST00000580002 XPNPEP2O43895 674 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 HIST1H1CP16403 213 aaKnown RBP22.47■■□□□ 1.19
SHMT1-207ENST00000580002 FKBP2P26885 142 aaKnown RBP22.47■■□□□ 1.19
SHMT1-207ENST00000580002 EIF1AXP47813 144 aaKnown RBP22.47■■□□□ 1.19
SHMT1-207ENST00000580002 NUDT6P53370 316 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 C6orf141Q5SZD1 244 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 FAM122BQ7Z309 247 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 Q8NA96 180 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 CYB561A3Q8NBI2 242 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 TSPAN32Q96QS1 320 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 HCAR1Q9BXC0 346 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 DNAJC27Q9NZQ0 273 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 CORINQ9Y5Q5 1042 aa22.47■■□□□ 1.19
SHMT1-207ENST00000580002 CD14P08571 375 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 CARD18P57730 90 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 VASNQ6EMK4 673 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 BBS1Q8NFJ9 593 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 OR2V1Q8NHB1 315 aa22.46■■□□□ 1.19
SHMT1-207ENST00000580002 C9orf43Q8TAL5 461 aaPredicted RBP22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms