RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 A0A1B0GTQ1 180 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 SCO2O43819 266 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 BGLAPP02818 100 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 MYL9P24844 172 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 PSMB10P40306 273 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 RPS11P62280 158 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-230ENST00000568076 CCL7P80098 99 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 DAB2P98082 770 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 SQSTM1Q13501 440 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 IL18Q14116 193 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 IL20RBQ6UXL0 311 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 TPRA1Q86W33 373 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 Q8N402 240 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 CHAC2Q8WUX2 184 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 THAP4Q8WY91 577 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 OR6C1Q96RD1 312 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 DUSP23Q9BVJ7 150 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 H7C1C5 153 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 SIGLEC6O43699 453 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 SLC19A2O60779 497 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 NUDT14O95848 222 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 CXCR1P25024 350 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 EVI2BP34910 448 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 LCN6P62502 163 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 RNF4P78317 190 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 RIN1Q13671 783 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 NR0B2Q15466 257 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 RABEPKQ7Z6M1 372 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 AKAP14Q86UN6 197 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 UBALD2Q8IYN6 164 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 TEX19Q8NA77 164 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 ZBTB8BQ8NAP8 495 aaPredicted RBP18.41■□□□□ 0.54
CLN3-230ENST00000568076 APCDD1LQ8NCL9 501 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 GUCD1Q96NT3 240 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 FKRPQ9H9S5 495 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 RASD1Q9Y272 281 aa18.41■□□□□ 0.54
CLN3-230ENST00000568076 A0A1W2PPK0 400 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 IDSB3KWA1 339 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 CDC40O60508 579 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLN3-230ENST00000568076 HLA-DQB1P01920 261 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 ANKRD34CP0C6C1 535 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 SLC2A2P11168 524 aaPredicted RBP18.4■□□□□ 0.54
CLN3-230ENST00000568076 PGCP20142 388 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 PTBP1P26599 531 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLN3-230ENST00000568076 OR2B6P58173 313 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 ACY1Q03154 408 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 SLC25A35Q3KQZ1 300 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 NKAIN1Q4KMZ8 207 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 ZNF684Q5T5D7 378 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 PMS2CLQ68D20 193 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 RPL22L1Q6P5R6 122 aaKnown RBP18.4■□□□□ 0.54
CLN3-230ENST00000568076 ANKRD37Q7Z713 158 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 RNF166Q96A37 237 aaPredicted RBP18.4■□□□□ 0.54
CLN3-230ENST00000568076 PDCD1LG2Q9BQ51 273 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 PTDSS2Q9BVG9 487 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 GRHPRQ9UBQ7 328 aa18.4■□□□□ 0.54
CLN3-230ENST00000568076 FAM25AB3EWG3 89 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 FAM25CB3EWG5 89 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 FAM25GB3EWG6 89 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 PSMD9O00233 223 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 ZNF354AO60765 605 aaPredicted RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 CPNE3O75131 537 aaKnown RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 EDNRAP25101 427 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 CBX3Q13185 183 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 CBFBQ13951 182 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 AGAP6Q5VW22 663 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 PWWP2BQ6NUJ5 590 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 ZNF517Q6ZMY9 492 aaPredicted RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 UBQLNLQ8IYU4 475 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 NFAM1Q8NET5 270 aaPredicted RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 AGAP4Q96P64 663 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 UBL7Q96S82 380 aaPredicted RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 TTYH2Q9BSA4 534 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 SEMA4CQ9C0C4 833 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 SLC22A4Q9H015 551 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 MMP28Q9H239 520 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 TAS2R5Q9NYW4 299 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 PILRBQ9UKJ0 227 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 TRAV36DV7A0A075B6V5 113 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 TRBV2A0A0J9YWF9 115 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 IGHV5-10-1A0A0J9YXX1 117 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 CD1AP06126 327 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 GP1BBP13224 206 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 P2RX1P51575 399 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 QPRTQ15274 297 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 HLA-BQ31612 363 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 UBE2J2Q8N2K1 259 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 GPR119Q8TDV5 335 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 KCTD12Q96CX2 325 aaKnown RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 SRA1Q9HD15 236 aaKnown RBP18.39■□□□□ 0.53
CLN3-230ENST00000568076 RXFP3Q9NSD7 469 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 ADAM30Q9UKF2 790 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 KLHDC2Q9Y2U9 406 aa18.39■□□□□ 0.53
CLN3-230ENST00000568076 PCNX3Q9H6A9 2034 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 OR6C70A6NIJ9 312 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 PAHP00439 452 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 SERPINA3P01011 423 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 HIST1H2ABP04908 130 aa18.38■□□□□ 0.53
CLN3-230ENST00000568076 EIF4EP06730 217 aaKnown RBP18.38■□□□□ 0.53
CLN3-230ENST00000568076 HOXA6P31267 233 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms