RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 INO80CQ6PI98 192 aaPredicted RBP10.11□□□□□ -0.79
USP3-218ENST00000560202 NANOGNBQ7Z5D8 188 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 CCDC103Q8IW40 242 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 LNX2Q8N448 690 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 TCEANCQ8N8B7 351 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 FAM83FQ8NEG4 500 aaPredicted RBP10.11□□□□□ -0.79
USP3-218ENST00000560202 MOSPD2Q8NHP6 518 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 IL4I1Q96RQ9 567 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 TTTY12Q9BZ98 90 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 OR2B2Q9GZK3 357 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 ZNF703Q9H7S9 590 aaPredicted RBP10.11□□□□□ -0.79
USP3-218ENST00000560202 BAIAP2Q9UQB8 552 aa10.11□□□□□ -0.79
USP3-218ENST00000560202 CEP295Q9C0D2 2601 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 MCIDASD6RGH6 385 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 SURF4O15260 269 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TLX2O43763 284 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 PRKYO43930 277 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 GLSO94925 669 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 PPP1R3DO95685 299 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 HPNP05981 417 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 FMO3P31513 532 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 SFTPDP35247 375 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 RPL4P36578 427 aaKnown RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 MLLT10P55197 1068 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 CXCR4P61073 352 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 FOXK2Q01167 660 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TEKQ02763 1124 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 MYBPHQ13203 477 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TOP3AQ13472 1001 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 MFSD13AQ14CX5 517 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 OR7A5Q15622 319 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 SGCBQ16585 318 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 SMN1Q16637 294 aaKnown RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 HYAL4Q2M3T9 481 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TMEM176BQ3YBM2 270 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 ALG10Q5BKT4 473 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 WIPI1Q5MNZ9 446 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 DPY19L2P2Q6ZN68 376 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 LRRC69Q6ZNQ3 347 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 IGFN1Q86VF2 1251 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 LRRC75AQ8NAA5 344 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 ZFP62Q8NB50 900 aaPredicted RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 BPIFB6Q8NFQ5 453 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 OR5J2Q8NH18 312 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TM9SF4Q92544 642 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 OR5B2Q96R09 309 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TAPBPLQ9BX59 468 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 ASPNQ9BXN1 380 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 MRPL39Q9NYK5 338 aaKnown RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 SEC14L4Q9UDX3 406 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 RAXQ9Y2V3 346 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 PCDHGA9Q9Y5G4 932 aaKnown RBP10.1□□□□□ -0.79
USP3-218ENST00000560202 SPTBN4Q9H254 2564 aa10.1□□□□□ -0.79
USP3-218ENST00000560202 TRAV17A0A0B4J275 112 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 A0A1W2PNR3 127 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 LIPT2A6NK58 231 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 FAM166BA8MTA8 275 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 M0R082 166 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 SLC1A7O00341 560 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 SLC2A10O95528 541 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 CCDC159P0C7I6 412 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 JUNBP17275 347 aaPredicted RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 CRHBPP24387 322 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 GTF2E2P29084 291 aaKnown RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 SHC1P29353 583 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 RAC1P63000 192 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 RPL18Q07020 188 aaKnown RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 C19orf57Q0VDD7 668 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 PMS2P3Q13401 168 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 SLC35F1Q5T1Q4 408 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 IGFL3Q6UXB1 125 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 EML6Q6ZMW3 1958 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 CFAP47Q6ZTR5 3102 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ZADH2Q8N4Q0 377 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 FAM26EQ8N5C1 309 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 TMEM251Q8N6I4 163 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ZNF417Q8TAU3 575 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 TMEM163Q8TC26 289 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ZNF566Q969W8 418 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 SFXN2Q96NB2 322 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ERMAPQ96PL5 475 aaPredicted RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 GPX7Q96SL4 187 aaPredicted RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 ZNF587Q96SQ5 575 aaPredicted RBP10.09□□□□□ -0.79
USP3-218ENST00000560202 NDEL1Q9GZM8 345 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 NRIP3Q9NQ35 241 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 CLN6Q9NWW5 311 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ALKBH4Q9NXW9 302 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 TAS2R5Q9NYW4 299 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 HDGFL3Q9Y3E1 203 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 CORINQ9Y5Q5 1042 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 H3BMQ9 156 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 PLPP3O14495 311 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 ARPC3O15145 178 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 XPNPEP2O43895 674 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 FZD7O75084 574 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 OR6A2O95222 327 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 F13BP05160 661 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 NOS3P29474 1203 aa10.09□□□□□ -0.79
USP3-218ENST00000560202 MAGEA5P43359 124 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms