RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FBXL2Q9UKC9 423 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 MGAT4BQ9UQ53 548 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 PCDHGB1Q9Y5G3 927 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 WIF1Q9Y5W5 379 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 SNX5Q9Y5X3 404 aa11.2□□□□□ -0.62
SHMT2-230ENST00000557427 ROS1P08922 2347 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 IL18BPO95998 194 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 HTR1AP08908 422 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 FAM157CP0CG43 387 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 STARP49675 285 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 PMS2P3Q13401 168 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 LSAMPQ13449 338 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 RAB39AQ14964 217 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 ARHGAP11BQ3KRB8 267 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 DCST1Q5T197 706 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 DEF8Q6ZN54 512 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 C20orf204Q6ZNR8 217 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 C16orf62Q7Z3J2 963 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 MARCH3Q86UD3 253 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 DEPDC4Q8N2C3 294 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 C9orf106Q8NAJ2 232 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 OR9Q2Q8NGE9 314 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 OR4D11Q8NGI4 311 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 VANGL1Q8TAA9 524 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-230ENST00000557427 CNIH3Q8TBE1 160 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 DUSP19Q8WTR2 217 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 NMD3Q96D46 503 aaKnown RBP11.19□□□□□ -0.62
SHMT2-230ENST00000557427 PIK3IP1Q96FE7 263 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 WDYHV1Q96HA8 205 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 PRRC1Q96M27 445 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 WFIKKN1Q96NZ8 548 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 ARHGDIGQ99819 225 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 NIPSNAP1Q9BPW8 284 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 LMF2Q9BU23 707 aaKnown RBP11.19□□□□□ -0.62
SHMT2-230ENST00000557427 PRDM14Q9GZV8 571 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 DSN1Q9H410 356 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 NMNAT1Q9HAN9 279 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-230ENST00000557427 TAS2R10Q9NYW0 307 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 MED11Q9P086 117 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 A4GNTQ9UNA3 340 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 KCNE3Q9Y6H6 103 aa11.19□□□□□ -0.62
SHMT2-230ENST00000557427 MED12Q93074 2177 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 A0A1W2PRQ8 180 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 CD8B2A6NJW9 211 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 GMFGO60234 142 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 FADS1O60427 444 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 SEC14L2O76054 403 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 IL33O95760 270 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 IGKV1D-16P01601 117 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 ACP2P11117 423 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 DCKP27707 260 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 EPHA2P29317 976 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 PRKAR1BP31321 381 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 EVI2BP34910 448 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 GAS1P54826 345 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 PSPHP78330 225 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 SLC35A2P78381 396 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 HPCAP84074 193 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 CHRNEQ04844 493 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 DGCR6Q14129 220 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 XAF1Q6GPH4 301 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 CLVS1Q8IUQ0 354 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-230ENST00000557427 ENTHD1Q8IYW4 607 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 AQP11Q8NBQ7 271 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 BPIFB6Q8NFQ5 453 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 OR4K17Q8NGC6 315 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 OR13F1Q8NGS4 319 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 IPCEF1Q8WWN9 437 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-230ENST00000557427 OTUB1Q96FW1 271 aaPredicted RBP11.18□□□□□ -0.62
SHMT2-230ENST00000557427 TRIB1Q96RU8 372 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 STACQ99469 402 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 DOK1Q99704 481 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 DGCR6LQ9BY27 220 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 REG4Q9BYZ8 158 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 PIGUQ9H490 435 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 PLCXD1Q9NUJ7 323 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 KLHL28Q9NXS3 571 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 PPP4R1LQ9P1A2 415 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 RHCGQ9UBD6 479 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 DKKL1Q9UK85 242 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 MRTO4Q9UKD2 239 aaKnown RBP11.18□□□□□ -0.62
SHMT2-230ENST00000557427 IFT52Q9Y366 437 aa11.18□□□□□ -0.62
SHMT2-230ENST00000557427 TRBV4-1A0A0J9YWV2 114 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 SH3PXD2BA1X283 911 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 M0R3H8 397 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ZIC3O60481 467 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 WBP4O75554 376 aaKnown RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 UGT2B17O75795 530 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 UTS2O95399 124 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 AK1P00568 194 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 GASTP01350 101 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ALOX5P09917 674 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 DPP4P27487 766 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 FMO3P31513 532 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 CRISP1P54107 249 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 PSMD4P55036 377 aaKnown RBP11.17□□□□□ -0.62
SHMT2-230ENST00000557427 NEDD8Q15843 81 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 ZNF311Q5JNZ3 666 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 FGD3Q5JSP0 725 aa11.17□□□□□ -0.62
SHMT2-230ENST00000557427 AP1ARQ63HQ0 302 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms