RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ENTPD8Q5MY95 495 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 SWT1Q5T5J6 900 aaKnown RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 OR7E24Q6IFN5 339 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 NIPAL3Q6P499 406 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 ZNF613Q6PF04 617 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 TSPYL5Q86VY4 417 aaPredicted RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 WDR31Q8NA23 367 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 PCYOX1LQ8NBM8 494 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 C1orf162Q8NEQ5 155 aaPredicted RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 KBTBD8Q8NFY9 601 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 VANGL1Q8TAA9 524 aaPredicted RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 RCN3Q96D15 328 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 ZNF583Q96ND8 569 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 OXGR1Q96P68 337 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 TMEM43Q9BTV4 400 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 GID8Q9NWU2 228 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 B3GALT5Q9Y2C3 310 aa12.99□□□□□ -0.33
USP28-204ENST00000537642 FLNAP21333 2647 aaKnown RBP12.99□□□□□ -0.33
USP28-204ENST00000537642 SHISA9B4DS77 424 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 CHP2O43745 196 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 ZNF43P17038 809 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 CLDN17P56750 224 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 SLC25A3Q00325 362 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 VEZF1Q14119 521 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 ZNF672Q499Z4 452 aaPredicted RBP12.98□□□□□ -0.33
USP28-204ENST00000537642 SHEQ5VZ18 495 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 LINC00114Q6XXX2 140 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 WDR88Q6ZMY6 472 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 H1FNTQ75WM6 255 aaPredicted RBP12.98□□□□□ -0.33
USP28-204ENST00000537642 LINGO2Q7L985 606 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 C17orf78Q8N4C9 275 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 ADPRHL1Q8NDY3 354 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 OR6S1Q8NH40 331 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 SLC26A7Q8TE54 656 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 PERPQ96FX8 193 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 SLC41A3Q96GZ6 507 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 MOGAT1Q96PD6 335 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 EPYCQ99645 322 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 DLL4Q9NR61 685 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 SLC17A5Q9NRA2 495 aa12.98□□□□□ -0.33
USP28-204ENST00000537642 ZFHX3Q15911 3703 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 LOC102725191A0A1B0GVB3 256 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 FAM220BPB1ANY3 271 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 LRRN3E7EW58 273 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 MS4A18H0YCH9 400 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ABCD4O14678 606 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 UPK3AO75631 287 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ZNF432O94892 652 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 HPRP00739 348 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ZNF83P51522 516 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 TGFBR3Q03167 851 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 MFSD13AQ14CX5 517 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 MS4A18Q3C1V0 323 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 Q5PR19 223 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ERICH5Q6P6B1 374 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ABHD12BQ7Z5M8 362 aaPredicted RBP12.97□□□□□ -0.33
USP28-204ENST00000537642 RP9Q8TA86 221 aaKnown RBP12.97□□□□□ -0.33
USP28-204ENST00000537642 ADAMTS16Q8TE57 1224 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 TMEM171Q8WVE6 324 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 RASSF5Q8WWW0 418 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 FBXW5Q969U6 566 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 BOD1Q96IK1 185 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 ALKBH3Q96Q83 286 aaPredicted RBP12.97□□□□□ -0.33
USP28-204ENST00000537642 GSX2Q9BZM3 304 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 LINC00470Q9BZP3 86 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 PCDHAC1Q9H158 963 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 LAMP3Q9UQV4 416 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 RCE1Q9Y256 329 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 AMDHD2Q9Y303 409 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 CORINQ9Y5Q5 1042 aa12.97□□□□□ -0.33
USP28-204ENST00000537642 TRAPPC13A5PLN9 417 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 OR6C65A6NJZ3 312 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 ZNF587BE7ETH6 402 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 ARHGEF9O43307 516 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 TRAF3IP2O43734 574 aaPredicted RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 CCDC22O60826 627 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 KRT33AO76009 404 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 SOD3P08294 240 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 DANCRP0C864 163 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 COX4I1P13073 169 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 PAX1P15863 534 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 CDH2P19022 906 aaPredicted RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 TNFRSF1BP20333 461 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 CD40P25942 277 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 PTH2RP49190 550 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 SEC24CP53992 1094 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 IL1RL1Q01638 556 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 SPOCK1Q08629 439 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 C1DQ13901 141 aaKnown RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 KLHL17Q6TDP4 642 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 TMEM108Q6UXF1 575 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 CARM1Q86X55 608 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 TREML1Q86YW5 311 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 SCAIQ8N9R8 606 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 SMAP2Q8WU79 429 aaPredicted RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 ELAC2Q9BQ52 826 aaKnown RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 C1QTNF6Q9BXI9 259 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 ASPNQ9BXN1 380 aa12.96□□□□□ -0.33
USP28-204ENST00000537642 ZNF701Q9NV72 531 aaPredicted RBP12.96□□□□□ -0.33
USP28-204ENST00000537642 CMTM6Q9NX76 183 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms