RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 ARRB1P49407 418 aaPredicted RBP3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 NCBP1Q09161 790 aaKnown RBP3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 MPPED2Q15777 294 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 BOLA3Q53S33 107 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 GPR157Q5UAW9 335 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 COX15Q7KZN9 410 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 ZNF546Q86UE3 836 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 PIANPQ8IYJ0 282 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 ACOT4Q8N9L9 421 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 EIF1ADQ8N9N8 165 aaKnown RBP3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 NDRG1Q92597 394 aaKnown RBP3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 IL22RA2Q969J5 263 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 TM4SF19Q96DZ7 209 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 OR2M2Q96R28 347 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 NPY6RQ99463 290 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 CCT7Q99832 543 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 TMEM246Q9BRR3 403 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 TRIM62Q9BVG3 475 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 EML4Q9HC35 981 aaKnown RBP3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 TMCO1Q9UM00 188 aa3.31□□□□□ -1.88
HMGCS1-207ENST00000514610 ATAD2BQ9ULI0 1458 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 IGLV3-22A0A075B6J6 115 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 A0A1B0GVL5 298 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 CLRN2A0PK11 232 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 OR5B21A6NL26 309 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 FOXE1O00358 373 aaPredicted RBP3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 RIPK2O43353 540 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 FCMRO60667 390 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 CLDN9O95484 217 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 TSPAN12O95859 305 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 GIPP09681 153 aaPredicted RBP3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 IL12AP29459 219 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 SH3BGRP55822 239 aaPredicted RBP3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 SEC61GP60059 68 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 C6orf89Q6UWU4 347 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 EFL1Q7Z2Z2 1120 aaKnown RBP3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 BHLHE23Q8NDY6 225 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 OR1L4Q8NGR5 311 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 FAM104AQ969W3 186 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 CHRDL1Q9BU40 450 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 DEFB127Q9H1M4 99 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 GIN1Q9NXP7 522 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 BFARQ9NZS9 450 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 EXTL2Q9UBQ6 330 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 PIGLQ9Y2B2 252 aa3.3□□□□□ -1.88
HMGCS1-207ENST00000514610 A0A0G2JN53 185 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 C12orf77C9JDV5 145 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 GAPDHP04406 335 aaKnown RBP3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 CCNCP24863 283 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 LHX2P50458 406 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 MECOMQ03112 1051 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 ACVR1Q04771 509 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 REG3AQ06141 175 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 KIAA0087Q14695 138 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 MAJINQ3KP22 176 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 CYB5R2Q6BCY4 276 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 OR2A2Q6IF42 318 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 FAM83FQ8NEG4 500 aaPredicted RBP3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 NPBQ8NG41 125 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 BLOC1S5Q8TDH9 187 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 ACER1Q8TDN7 264 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 SRSF12Q8WXF0 261 aaKnown RBP3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 FGF14Q92915 247 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 RNF185Q96GF1 192 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 ROGDIQ9GZN7 287 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 SRMSQ9H3Y6 488 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 AZI2Q9H6S1 392 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 LRRC40Q9H9A6 602 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 FN3KRPQ9HA64 309 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 SIAEQ9HAT2 523 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 LY9Q9HBG7 655 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 KCNIP1Q9NZI2 227 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 MMP17Q9ULZ9 603 aa3.29□□□□□ -1.88
HMGCS1-207ENST00000514610 A6NDX4 124 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 CA11O75493 328 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 MMP1P03956 469 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 CRISP2P16562 243 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 CEBPDP49716 269 aaPredicted RBP3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 PDIA2Q13087 525 aaKnown RBP3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 PSG5Q15238 335 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 CYTH1Q15438 398 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 FAM43BQ6ZT52 329 aaPredicted RBP3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 NUDCD3Q8IVD9 361 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 ARIH2OSQ8N7S6 290 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 Q8N9W7 124 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 TRPV1Q8NER1 839 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 ACOT11Q8WXI4 607 aaPredicted RBP3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 C12orf42Q96LP6 360 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 ZNF641Q96N77 438 aaPredicted RBP3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 FMO2Q99518 471 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 FAIM2Q9BWQ8 316 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 PPA2Q9H2U2 334 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 NMRAL1Q9HBL8 299 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 ZNF639Q9UID6 485 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 TRAPPC4Q9Y296 219 aa3.28□□□□□ -1.88
HMGCS1-207ENST00000514610 BTBD17A6NE02 478 aa3.27□□□□□ -1.89
HMGCS1-207ENST00000514610 FAM166BA8MTA8 275 aa3.27□□□□□ -1.89
HMGCS1-207ENST00000514610 TOM1O60784 492 aa3.27□□□□□ -1.89
HMGCS1-207ENST00000514610 B4GALT2O60909 372 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms