RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TUSC5Q8IXB3 177 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 KDM8Q8N371 416 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 LINC00471Q8N535 108 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 SCAIQ8N9R8 606 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 NAXEQ8NCW5 288 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 OR10G2Q8NGC3 310 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 OR51A7Q8NH64 312 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 GNPDA2Q8TDQ7 276 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 GIPC3Q8TF64 312 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 SDCCAG3Q96C92 435 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 GMPPAQ96IJ6 420 aaPredicted RBP13.34□□□□□ -0.27
NUP54-213ENST00000513352 ZFP3Q96NJ6 502 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 PSD2Q9BQI7 771 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 GLRX2Q9NS18 164 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 PDP1Q9P0J1 537 aaPredicted RBP13.34□□□□□ -0.27
NUP54-213ENST00000513352 KIF17Q9P2E2 1029 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 Q9UFV3 132 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 ERRFI1Q9UJM3 462 aaPredicted RBP13.34□□□□□ -0.27
NUP54-213ENST00000513352 B3GALT5Q9Y2C3 310 aa13.34□□□□□ -0.27
NUP54-213ENST00000513352 A0A1W2PNV4 684 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 UNC119BA6NIH7 251 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 H3BNX3 289 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 PLPP3O14495 311 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ZG16O60844 167 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 SMNDC1O75940 238 aaKnown RBP eCLIP13.33□□□□□ -0.28
NUP54-213ENST00000513352 ASAH2BP0C7U1 165 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 POU2F1P14859 743 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ZNF23P17027 643 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ZNF43P17038 809 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 CTSSP25774 331 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 CEACAM8P31997 349 aaPredicted RBP13.33□□□□□ -0.28
NUP54-213ENST00000513352 OMPP47874 163 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 H3F3AP84243 136 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ADORA2A-AS1P86434 159 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 PUDPQ08623 228 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 FOXF2Q12947 444 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 GK3PQ14409 553 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 EEF1A1P5Q5VTE0 462 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 HMBOX1Q6NT76 420 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 TMEM179BQ7Z7N9 219 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 UEVLDQ8IX04 471 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 HS3ST5Q8IZT8 346 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 AQP11Q8NBQ7 271 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ICA1LQ8NDH6 482 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 ADPRHL1Q8NDY3 354 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 OR9K2Q8NGE7 335 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 GTPBP3Q969Y2 492 aaKnown RBP13.33□□□□□ -0.28
NUP54-213ENST00000513352 OXGR1Q96P68 337 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 PKP2Q99959 881 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 TACO1Q9BSH4 297 aaKnown RBP13.33□□□□□ -0.28
NUP54-213ENST00000513352 NDEL1Q9GZM8 345 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 C12orf49Q9H741 205 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 RNF6Q9Y252 685 aa13.33□□□□□ -0.28
NUP54-213ENST00000513352 NOSIPQ9Y314 301 aaKnown RBP13.33□□□□□ -0.28
NUP54-213ENST00000513352 SAC3D1A6NKF1 404 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 EEF1E1-BLOC1S5C9J1V9 151 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 CDC42EP2O14613 210 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 GPR171O14626 319 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 EEF1E1O43324 174 aaKnown RBP13.32□□□□□ -0.28
NUP54-213ENST00000513352 FZD7O75084 574 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 SS18L1O75177 396 aaPredicted RBP13.32□□□□□ -0.28
NUP54-213ENST00000513352 VAMP5O95183 116 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 YES1P07947 543 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 BMP5P22003 454 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 AGTR1P30556 359 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 AQP2P41181 271 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 SLC9A3P48764 834 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 P2RY4P51582 365 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 POU3F1Q03052 451 aaPredicted RBP13.32□□□□□ -0.28
NUP54-213ENST00000513352 SLC17A1Q14916 467 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 TAF11Q15544 211 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 PGBD2Q6P3X8 592 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 VWA1Q6PCB0 445 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 CASP12Q6UXS9 341 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 TMPRSS11FQ6ZWK6 438 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 FAM214BQ7L5A3 538 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 ZER1Q7Z7L7 766 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 OR5K1Q8NHB7 308 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 CENPNQ96H22 339 aaPredicted RBP13.32□□□□□ -0.28
NUP54-213ENST00000513352 SF3B5Q9BWJ5 86 aaKnown RBP13.32□□□□□ -0.28
NUP54-213ENST00000513352 SFXN3Q9BWM7 321 aa13.32□□□□□ -0.28
NUP54-213ENST00000513352 FAM90A27PA6NNH2 459 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 ZNF716A6NP11 495 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 MS4A18H0YCH9 400 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 DVL2O14641 736 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 HPRP00739 348 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 F13BP05160 661 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 CRHP06850 196 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 PRKACGP22612 351 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 FPR3P25089 353 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 CHRNB4P30926 498 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 OPRM1P35372 400 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 RPL4P36578 427 aaKnown RBP13.31□□□□□ -0.28
NUP54-213ENST00000513352 ELF3P78545 371 aaPredicted RBP13.31□□□□□ -0.28
NUP54-213ENST00000513352 RPL18Q07020 188 aaKnown RBP13.31□□□□□ -0.28
NUP54-213ENST00000513352 PDK3Q15120 406 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 RCN1Q15293 331 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 MS4A18Q3C1V0 323 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 ZBED5Q49AG3 693 aa13.31□□□□□ -0.28
NUP54-213ENST00000513352 SHQ1Q6PI26 577 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms