RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	FLOT2	Q14254	428 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	OR1Q1	Q15612	314 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SGCB	Q16585	318 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	FAM98B	Q52LJ0	330 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	C1orf146	Q5VVC0	180 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	ULK3	Q6PHR2	472 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	DEF8	Q6ZN54	512 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	PLEKHM3	Q6ZWE6	761 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	GRINA	Q7Z429	371 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	CARM1	Q86X55	608 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	LRRC75A-AS1	Q8N1F1	130 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	DNAJA4	Q8WW22	397 aa	Predicted RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	GEMIN6	Q8WXD5	167 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SMPDL3B	Q92485	455 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	PIGT	Q969N2	578 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	TAMM41	Q96BW9	452 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	DDIT4L	Q96D03	193 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	PIK3IP1	Q96FE7	263 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SLC47A1	Q96FL8	570 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	RSRC1	Q96IZ7	334 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	HRASLS5	Q96KN8	279 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SEPHS2	Q99611	448 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	CCL19	Q99731	98 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	FNDC11	Q9BVV2	318 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	PRRG4	Q9BZD6	226 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	OR2B2	Q9GZK3	357 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	UBQLN3	Q9H347	655 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	TES	Q9UGI8	421 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	NDRG3	Q9UGV2	375 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	AP4B1	Q9Y6B7	739 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	ANK3	Q12955	4377 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	OR2M5	A3KFT3	312 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	AQP12B	A6NM10	295 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	CPSF4L	A6NMK7	179 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520		H0Y3Z8	333 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520		H3BML4	177 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	FAAH	O00519	579 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	GNGT2	O14610	69 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	FRS3	O43559	492 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	FMO6P	O60774	539 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PNMT	P11086	282 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZNF17	P17021	662 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	CCNA2	P20248	432 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PSMA4	P25789	261 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	TACR3	P29371	465 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	SLC7A1	P30825	629 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ACAA2	P42765	397 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	OR1E2	P47887	323 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	STAR	P49675	285 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	CLK1	P49759	484 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	CARD18	P57730	90 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	SMIM11A	P58511	58 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	HOXC5	Q00444	222 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	FAM27E3	Q08E93	113 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ST3GAL3	Q11203	375 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	TOMM34	Q15785	309 aa	Predicted RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	BCL2A1	Q16548	175 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	NRF1	Q16656	503 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PLPPR5	Q32ZL2	321 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	GLIPR1L2	Q4G1C9	344 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	NHSL2	Q5HYW2	709 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ENTPD8	Q5MY95	495 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PPP4R4	Q6NUP7	873 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PGM2L1	Q6PCE3	622 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	TTC33	Q6PID6	262 aa	Predicted RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZNF771	Q7L3S4	317 aa	Predicted RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	AQP12A	Q8IXF9	295 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	UBQLNL	Q8IYU4	475 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	CDK20	Q8IZL9	346 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	LILRA2	Q8N149	483 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	OR5M1	Q8NGP8	315 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZPLD1	Q8TCW7	415 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	NTNG2	Q96CW9	530 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZC3HAV1L	Q96H79	300 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	WFIKKN1	Q96NZ8	548 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZNF347	Q96SE7	839 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PIP5K1A	Q99755	562 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ARHGDIG	Q99819	225 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	POLR2J2	Q9GZM3	115 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	POLR2J3	Q9H1A7	115 aa	Known RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	PAQR5	Q9NXK6	330 aa	Predicted RBP	7.79	□□□□□ -1.16
USP4-213	ENST00000488520	POMP	Q9Y244	141 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	ZNF337	Q9Y3M9	751 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520		V9GYQ6	96 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	STAB1	Q9NY15	2570 aa		7.79	□□□□□ -1.16
USP4-213	ENST00000488520	TMED7-TICAM2	A0A0A6YYA0	188 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	TRAPPC13	A5PLN9	417 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ERICH4	A6NGS2	130 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	C17orf51	A8MQB3	221 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520		A8MXE2	369 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520		M0R3H8	397 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	RCBTB2	O95199	551 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	SYNGR4	O95473	234 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	CNOT4	O95628	575 aa	Known RBP	7.78	□□□□□ -1.16
USP4-213	ENST00000488520	FABP3	P05413	133 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	CD8B	P10966	210 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	PRG2	P13727	222 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	PRKCA	P17252	672 aa		7.78	□□□□□ -1.16
USP4-213	ENST00000488520	ELK4	P28324	431 aa		7.78	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms