RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MAP3K8P41279 467 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 EFNB2P52799 333 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 ALDH18A1P54886 795 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 POU6F2P78424 691 aaPredicted RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 ROR2Q01974 943 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 MSMPQ1L6U9 139 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 KLHL26Q53HC5 615 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 SPIN4Q56A73 249 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 RNASEH2BQ5TBB1 312 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 PRAMEF8Q5VWM4 474 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 PRAMEF7Q5VXH5 474 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 STEAP4Q687X5 459 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 C6orf89Q6UWU4 347 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 PIWIL3Q7Z3Z3 882 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 LRP11Q86VZ4 500 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 CCDC103Q8IW40 242 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 LRRC8AQ8IWT6 810 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 AGGF1Q8N302 714 aaeCLIP6.72□□□□□ -1.33
USP54-211ENST00000474929 C1orf52Q8N6N3 182 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 POU5F2Q8N7G0 328 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 SDR9C7Q8NEX9 313 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 OR9K2Q8NGE7 335 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 OR5R1Q8NH85 324 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 ZFP28Q8NHY6 868 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 SYNPRQ8TBG9 265 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 C11orf40Q8WZ69 217 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 DDIT4LQ96D03 193 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 MAP6Q96JE9 813 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 KLHDC3Q9BQ90 382 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 ALG9Q9H6U8 611 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 RANBP3Q9H6Z4 567 aaPredicted RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 GRPEL1Q9HAV7 217 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 NMRAL1Q9HBL8 299 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 LZTFL1Q9NQ48 299 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 CYSLTR2Q9NS75 346 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 GAR1Q9NY12 217 aaKnown RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 TBK1Q9UHD2 729 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 SNX6Q9UNH7 406 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 RNF11Q9Y3C5 154 aa6.72□□□□□ -1.33
USP54-211ENST00000474929 SOX21Q9Y651 276 aaPredicted RBP6.72□□□□□ -1.33
USP54-211ENST00000474929 FAM187AA6NFU0 413 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 UBXN8O00124 270 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 TM9SF1O15321 606 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 DNAJA2O60884 412 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 RSL1D1O76021 490 aaKnown RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 WISP3O95389 354 aaPredicted RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 QDPRP09417 244 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 SBK2P0C263 348 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 IMPDH2P12268 514 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 GFAPP14136 432 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 ZNF250P15622 560 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 IVDP26440 423 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 LIPAP38571 399 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 MDH2P40926 338 aaKnown RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 HTR3AP46098 478 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 ZNF81P51508 661 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 CCNG1P51959 295 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 SESN3P58005 492 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 BTG1P62324 171 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 PAX2Q02962 417 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 MGAT5Q09328 741 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 ALKBH6Q3KRA9 238 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 RAPH1Q70E73 1250 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 NLRC3Q7RTR2 1065 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 GRINAQ7Z429 371 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 GOLGA7Q7Z5G4 137 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 SNX32Q86XE0 403 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 PPIL6Q8IXY8 311 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 ZNF614Q8N883 585 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 SCCPDHQ8NBX0 429 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 BHLHE22Q8NFJ8 381 aaPredicted RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 RFWD2Q8NHY2 731 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 VANGL1Q8TAA9 524 aaPredicted RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 ZNF519Q8TB69 540 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 ATOH8Q96SQ7 321 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 STACQ99469 402 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 BTBD2Q9BX70 525 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 BCL2L14Q9BZR8 327 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 SLC19A3Q9BZV2 496 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 QRSL1Q9H0R6 528 aaKnown RBP6.71□□□□□ -1.34
USP54-211ENST00000474929 C1orf198Q9H425 327 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 CNTD2Q9H8S5 307 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 RAB18Q9NP72 206 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 DUSP22Q9NRW4 184 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 TAS2R7Q9NYW3 318 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 TXNDC16Q9P2K2 825 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 VPS29Q9UBQ0 182 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 RCE1Q9Y256 329 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 DTNAQ9Y4J8 743 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 CAPN6Q9Y6Q1 641 aa6.71□□□□□ -1.34
USP54-211ENST00000474929 KIR2DS1A0A191URI9 304 aa6.7□□□□□ -1.34
USP54-211ENST00000474929 ZNF99A8MXY4 864 aaPredicted RBP6.7□□□□□ -1.34
USP54-211ENST00000474929 ENSAO43768 121 aaKnown RBP6.7□□□□□ -1.34
USP54-211ENST00000474929 AKAP8O43823 692 aaKnown RBP6.7□□□□□ -1.34
USP54-211ENST00000474929 URI1O94763 535 aaPredicted RBP6.7□□□□□ -1.34
USP54-211ENST00000474929 KRT14P02533 472 aa6.7□□□□□ -1.34
USP54-211ENST00000474929 PF4P02776 101 aa6.7□□□□□ -1.34
USP54-211ENST00000474929 GPIP06744 558 aa6.7□□□□□ -1.34
USP54-211ENST00000474929 ADH4P08319 380 aa6.7□□□□□ -1.34
USP54-211ENST00000474929 KRT16P08779 473 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms