RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 CCDC151A5D8V7 595 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 CLDN24A6NM45 220 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 NPIPB8E9PQR5 432 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 TRAPPC2LH3BP13 241 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF264O43296 627 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF500O60304 480 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 FCMRO60667 390 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SEC14L2O76054 403 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 PMS2P2O95744 297 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 OTCP00480 354 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 IGKV3-15P01624 115 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 IGHV2-5P01817 119 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 C1QCP02747 245 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 HMGN2P05204 90 aaKnown RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ALOX5P09917 674 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 UBTFL6P0CB48 400 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 TYK2P29597 1187 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 NTSP30990 170 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ANP32AP39687 249 aaKnown RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SELENOPP49908 381 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ATP12AP54707 1039 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SUMO3P55854 103 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SCAND1P57086 179 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 DR1Q01658 176 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF763Q0D2J5 394 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 NPRL3Q12980 569 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SCGB2A2Q13296 93 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SKP2Q13309 424 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 MAPK14Q16539 360 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SPRNQ5BIV9 151 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF311Q5JNZ3 666 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SPDYAQ5MJ70 313 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 PDZK1Q5T2W1 519 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 DCAF12L2Q5VW00 463 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ACSM5Q6NUN0 579 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 CYS1Q717R9 158 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 MTERF4Q7Z6M4 381 aaKnown RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZBTB46Q86UZ6 589 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 WDFY1Q8IWB7 410 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 DEFB108BQ8NET1 73 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 OR4M2Q8NGB6 313 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 OR4F15Q8NGB8 312 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 CLHC1Q8NHS4 586 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 KIF18AQ8NI77 898 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 FAM110DQ8TAY7 271 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 METTL6Q8TCB7 284 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 RDH5Q92781 318 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZG16BQ96DA0 208 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 FAM120BQ96EK7 910 aaKnown RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 KTI12Q96EK9 354 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 CHMP6Q96FZ7 201 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 BOD1Q96IK1 185 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF75AQ96N20 296 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 TMEM237Q96Q45 408 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ALKBH3Q96Q83 286 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 KCNS3Q9BQ31 491 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 LAT2Q9GZY6 243 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 PIGUQ9H490 435 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 NTN4Q9HB63 628 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 TCF7L1Q9HCS4 588 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 SLC52A3Q9NQ40 469 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ACER3Q9NUN7 267 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 NMRK1Q9NWW6 199 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 DCAF16Q9NXF7 216 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 GRHL1Q9NZI5 618 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 BAIAP2L1Q9UHR4 511 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 FBXO9Q9UK97 447 aaPredicted RBP4.48□□□□□ -1.69
PTPN4-209ENST00000469511 DTNAQ9Y4J8 743 aa4.48□□□□□ -1.69
PTPN4-209ENST00000469511 ARPC4-TTLL3A0A0A6YYG9 625 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CCDC189A1A4V9 331 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 TTC36A6NLP5 189 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 M0R233 179 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 AP3D1O14617 1153 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 GPR171O14626 319 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 PIN1P1O15428 100 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SYNGR3O43761 229 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 EIF4E2O60573 245 aaKnown RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 RSL1D1O76021 490 aaKnown RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SUPT7LO94864 414 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 AKR7A3O95154 331 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CLPTM1O96005 669 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KNG1P01042 644 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KRT6AP02538 564 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KRT6BP04259 564 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 IGHV4-38-2P0DP08 117 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MED14OSP0DP75 135 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 UBL4AP11441 157 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 BCKDHAP12694 445 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 HSD3B1P14060 373 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 CBR1P16152 277 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 NR4A1P22736 598 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 HMOX2P30519 316 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 RYKP34925 604 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 FRKP42685 505 aaPredicted RBP4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MAGEA8P43361 318 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 MAGEA12P43365 314 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 KRT6CP48668 564 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 P2RY4P51582 365 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 TMEM33P57088 247 aa4.47□□□□□ -1.69
PTPN4-209ENST00000469511 SEC61A1P61619 476 aaKnown RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms