RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 HOPXQ9BPY8 73 aaPredicted RBP13.38□□□□□ -0.27
LIMS3-201ENST00000437679 TMEM204Q9BSN7 226 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 ASPNQ9BXN1 380 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 BEX4Q9NWD9 120 aaPredicted RBP13.38□□□□□ -0.27
LIMS3-201ENST00000437679 SEC14L4Q9UDX3 406 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 SH3GLB1Q9Y371 365 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 RNF115Q9Y4L5 304 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 ITPR3Q14573 2671 aa13.38□□□□□ -0.27
LIMS3-201ENST00000437679 PDLIM1O00151 329 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 CLOCKO15516 846 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 AKAP8O43823 692 aaKnown RBP13.37□□□□□ -0.27
LIMS3-201ENST00000437679 PLAUP00749 431 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 PTNP21246 168 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 MPGP29372 298 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 SELENOPP49908 381 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 NUDT2P50583 147 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 GYS2P54840 703 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 CLDN17P56750 224 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 GABRA6Q16445 453 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 TTC33Q6PID6 262 aaPredicted RBP13.37□□□□□ -0.27
LIMS3-201ENST00000437679 LINC00114Q6XXX2 140 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 SLC15A3Q8IY34 581 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 SCAIQ8N9R8 606 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 ADPRHL1Q8NDY3 354 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 C1orf162Q8NEQ5 155 aaPredicted RBP13.37□□□□□ -0.27
LIMS3-201ENST00000437679 OR52N5Q8NH56 324 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 CCL19Q99731 98 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 PCDHAC1Q9H158 963 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 MYLK2Q9H1R3 596 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 CMTM6Q9NX76 183 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 SLC7A7Q9UM01 511 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 RCE1Q9Y256 329 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 MED13LQ71F56 2210 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 HIVEP1P15822 2718 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 CELSR1Q9NYQ6 3014 aa13.37□□□□□ -0.27
LIMS3-201ENST00000437679 LOC102725191A0A1B0GVB3 256 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF587BE7ETH6 402 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 NDUFAB1O14561 156 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 HS3ST1O14792 307 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 GSTA4O15217 222 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 MT-ATP6P00846 226 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 BGLAPP02818 100 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 HOXC12P31275 282 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 KDELR2P33947 212 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 FOXG1P55316 489 aaPredicted RBP13.36□□□□□ -0.27
LIMS3-201ENST00000437679 TAS2R41P59536 307 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 LIPEQ05469 1076 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 LTBQ06643 244 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 BSPH1Q075Z2 132 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 PMS2P3Q13401 168 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 CYBRD1Q53TN4 286 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 KLHL17Q6TDP4 642 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 SEZ6L2Q6UXD5 910 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 HACD2Q6Y1H2 254 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 UEVLDQ8IX04 471 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 C17orf78Q8N4C9 275 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 AKAP1Q92667 903 aaKnown RBP eCLIP13.36□□□□□ -0.27
LIMS3-201ENST00000437679 MPP4Q96JB8 637 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 PIP5K1AQ99755 562 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 MRPL39Q9NYK5 338 aaKnown RBP13.36□□□□□ -0.27
LIMS3-201ENST00000437679 B3GAT1Q9P2W7 334 aa13.36□□□□□ -0.27
LIMS3-201ENST00000437679 MAP1AP78559 2803 aaPredicted RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 RAI1Q7Z5J4 1906 aaPredicted RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 DPRXA6NFQ7 191 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 DYNC1I1O14576 645 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SMPD2O60906 423 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SLC43A1O75387 559 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 LYPD3O95274 346 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 THY1P04216 161 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 CDH2P19022 906 aaPredicted RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 TNFRSF1BP20333 461 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 PRDX6P30041 224 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SLC7A2P52569 658 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 KLHL24Q6TFL4 600 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 DEF8Q6ZN54 512 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF611Q8N823 705 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 LZICQ8WZA0 190 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SLC41A3Q96GZ6 507 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 TPD52L3Q96J77 140 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 MOGAT1Q96PD6 335 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 LINC00470Q9BZP3 86 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 AMBRA1Q9C0C7 1298 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 POLR2J2Q9GZM3 115 aaKnown RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 POLR2J3Q9H1A7 115 aaKnown RBP13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SLC17A5Q9NRA2 495 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 AMDHD2Q9Y303 409 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 SLC25A15Q9Y619 301 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 ALPK2Q86TB3 2170 aa13.35□□□□□ -0.27
LIMS3-201ENST00000437679 A0A1W2PR80 420 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 LRRN3E7EW58 273 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 MS4A18H0YCH9 400 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 NME4O00746 187 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 SHOX2O60902 331 aaPredicted RBP13.34□□□□□ -0.27
LIMS3-201ENST00000437679 OR6A2O95222 327 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 OR1E2P47887 323 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 ZNF83P51522 516 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 SELENOWP63302 87 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 LGALS3BPQ08380 585 aa13.34□□□□□ -0.27
LIMS3-201ENST00000437679 PUDPQ08623 228 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms