RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 LAMP1P11279 417 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 LCN1P31025 176 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 COMPP49747 757 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 PNLIPRP2P54317 469 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 IRX1P78414 480 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 MRPS22P82650 360 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 LRRC74AQ0VAA2 488 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ITGADQ13349 1161 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 EXOSC7Q15024 291 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ZNHIT3Q15649 155 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 LTB4RQ15722 352 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NTRK2Q16620 822 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 HYAL4Q2M3T9 481 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 VPS26BQ4G0F5 336 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ANXA8L1Q5VT79 327 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 EPGNQ6UW88 154 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SZRD1Q7Z422 152 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SLC34A3Q8N130 599 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 FBXW8Q8N3Y1 598 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ZFP62Q8NB50 900 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 CLEC18CQ8NCF0 446 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ST6GALNAC3Q8NDV1 305 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 OR7G2Q8NG99 324 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 OR7A2PQ8NGA2 310 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 CLHC1Q8NHS4 586 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 PSMA8Q8TAA3 256 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SPPL2AQ8TCT8 520 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NR4A3Q92570 626 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 TESCQ96BS2 214 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 MOAP1Q96BY2 351 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NTNG2Q96CW9 530 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 PGAM5Q96HS1 289 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 MAGEB18Q96M61 343 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 WDFY2Q96P53 400 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 BTBD9Q96Q07 612 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SLX1AQ9BQ83 275 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 CCDC28BQ9BUN5 200 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 C1orf50Q9BV19 199 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 DPY30Q9C005 99 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NXF5Q9H1B4 397 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 WDR55Q9H6Y2 383 aaPredicted RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 IL1RL2Q9HB29 575 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 FOLH1BQ9HBA9 442 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 HHATLQ9HCP6 504 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SH2D2AQ9NP31 389 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 MED4Q9NPJ6 270 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 DDX18Q9NVP1 670 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 AIG1Q9NVV5 245 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF446Q9NWS9 450 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 GIN1Q9NXP7 522 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 MRTO4Q9UKD2 239 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 PCDHGB4Q9UN71 923 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NTNG1Q9Y2I2 539 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 LSM4Q9Y4Z0 139 aaKnown RBP2.24□□□□□ -2.05
VPS13A-208ENST00000423463 USH1CQ9Y6N9 552 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 SCN2AQ99250 2005 aa2.24□□□□□ -2.05
VPS13A-208ENST00000423463 NUP210LQ5VU65 1888 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ZFYVE26Q68DK2 2539 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 DOCK10Q96BY6 2186 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 FRYQ5TBA9 3013 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 GOLGA8QA0A0J9YX86 632 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 GOLGA8OA6NCC3 632 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ANKUB1A6NFN9 424 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 OR6C70A6NIJ9 312 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 NPIPA5E9PKD4 350 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 GOLGA8NF8WBI6 632 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 UBDO15205 165 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 CFLARO15519 480 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 HCRTR2O43614 444 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ZIC3O60481 467 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 TSPAN2O60636 221 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 DIAPH2O60879 1101 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 SCN2BO60939 215 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 NKX2-2O95096 273 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 KRT16P08779 473 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 CT45A8P0DMV1 189 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 CT45A9P0DMV2 189 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 CCL3P10147 92 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ETFAP13804 333 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 IDO1P14902 403 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 HOXB6P17509 224 aaKnown RBP2.23□□□□□ -2.05
VPS13A-208ENST00000423463 S100A3P33764 101 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 KRT20P35900 424 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 MAP3K8P41279 467 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 CCT3P49368 545 aaKnown RBP2.23□□□□□ -2.05
VPS13A-208ENST00000423463 MRPL19P49406 292 aaKnown RBP2.23□□□□□ -2.05
VPS13A-208ENST00000423463 TDGF1P3P51864 188 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ART1P52961 327 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 PSMD4P55036 377 aaKnown RBP2.23□□□□□ -2.05
VPS13A-208ENST00000423463 DIO3P55073 304 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 PPIAP62937 165 aaKnown RBP2.23□□□□□ -2.05
VPS13A-208ENST00000423463 ADORA2A-AS1P86434 159 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 PLGLB1Q02325 96 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 RBPJQ06330 500 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 PLCXD2Q0VAA5 305 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 EPS8Q12929 822 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 SNTA1Q13424 505 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 TOMM20Q15388 145 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 EFNB3Q15768 340 aa2.23□□□□□ -2.05
VPS13A-208ENST00000423463 DECR1Q16698 335 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms