RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 CELSR1Q9NYQ6 3014 aa13.03□□□□□ -0.32
LIMS4-201ENST00000413601 F8P00451 2351 aa13.02□□□□□ -0.32
LIMS4-201ENST00000413601 TRAPPC13A5PLN9 417 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 GMNCA6NCL1 334 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 LRRN3E7EW58 273 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 MS4A18H0YCH9 400 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CLOCKO15516 846 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 KRT33AO76009 404 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 LYPD3O95274 346 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CD3EP07766 207 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CDH2P19022 906 aaPredicted RBP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 IL1RL1Q01638 556 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 MS4A18Q3C1V0 323 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 LRRC23Q53EV4 343 aaPredicted RBP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 OR7E24Q6IFN5 339 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 C20orf204Q6ZNR8 217 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CPLX4Q7Z7G2 160 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CARM1Q86X55 608 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 SLC15A3Q8IY34 581 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 MICU2Q8IYU8 434 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 C10orf53Q8N6V4 93 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 OR6S1Q8NH40 331 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 LILRB1Q8NHL6 650 aaPredicted RBP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 AKAP1Q92667 903 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 PIGTQ969N2 578 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CCL19Q99731 98 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 AMBRA1Q9C0C7 1298 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 NSRP1Q9H0G5 558 aaKnown RBP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 PCDHAC1Q9H158 963 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 MYLK2Q9H1R3 596 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 EFCAB1Q9HAE3 211 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 BEX4Q9NWD9 120 aaPredicted RBP13.02□□□□□ -0.33
LIMS4-201ENST00000413601 BAG5Q9UL15 447 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 SLC7A7Q9UM01 511 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 CADP27708 2225 aa13.02□□□□□ -0.33
LIMS4-201ENST00000413601 ELOVL7A1L3X0 281 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 HS3ST1O14792 307 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 SNX3O60493 162 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 SHOX2O60902 331 aaPredicted RBP13.01□□□□□ -0.33
LIMS4-201ENST00000413601 HPRP00739 348 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 IFNA14P01570 189 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 NQO1P15559 274 aaKnown RBP13.01□□□□□ -0.33
LIMS4-201ENST00000413601 MPGP29372 298 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 KDELR2P33947 212 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 OR1E2P47887 323 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 NUDT2P50583 147 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 ZNF83P51522 516 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 GNGT1P63211 74 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 TGFBR3Q03167 851 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 C1DQ13901 141 aaKnown RBP13.01□□□□□ -0.33
LIMS4-201ENST00000413601 MFSD13AQ14CX5 517 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 CYBRD1Q53TN4 286 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 ARPINQ7Z6K5 226 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 WDR31Q8NA23 367 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 NEUROG1Q92886 237 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 SLC41A3Q96GZ6 507 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 MS4A3Q96HJ5 214 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 C1QTNF6Q9BXI9 259 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 ASPNQ9BXN1 380 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 CORINQ9Y5Q5 1042 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 SLC25A15Q9Y619 301 aa13.01□□□□□ -0.33
LIMS4-201ENST00000413601 LOC102725191A0A1B0GVB3 256 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ZNF587BE7ETH6 402 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 NME4O00746 187 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 SMPD2O60906 423 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 UPK3AO75631 287 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ZNF432O94892 652 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 HLA-DOBP13765 273 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 SLC7A2P52569 658 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ADAM8P78325 824 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 LIPEQ05469 1076 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 PMS2P3Q13401 168 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ADAM5Q6NVV9 412 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 C8orf82Q6P1X6 216 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 TTC33Q6PID6 262 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 DEF8Q6ZN54 512 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 LINGO2Q7L985 606 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 SSX8Q7RTT4 187 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ABHD12BQ7Z5M8 362 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 TGIF2LYQ8IUE0 185 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ZNF611Q8N823 705 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 SCAIQ8N9R8 606 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ADPRHL1Q8NDY3 354 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 C1orf162Q8NEQ5 155 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 KBTBD8Q8NFY9 601 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 TPD52L3Q96J77 140 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ALKBH3Q96Q83 286 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 PIP5K1AQ99755 562 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 HOPXQ9BPY8 73 aaPredicted RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 PRSS27Q9BQR3 290 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 SLC17A5Q9NRA2 495 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 MRPL39Q9NYK5 338 aaKnown RBP13□□□□□ -0.33
LIMS4-201ENST00000413601 AP3M1Q9Y2T2 418 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 HIVEP1P15822 2718 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ITPR3Q14573 2671 aa13□□□□□ -0.33
LIMS4-201ENST00000413601 ARID1AO14497 2285 aa12.99□□□□□ -0.33
LIMS4-201ENST00000413601 ALPK2Q86TB3 2170 aa12.99□□□□□ -0.33
LIMS4-201ENST00000413601 KPNA4O00629 521 aaPredicted RBP12.99□□□□□ -0.33
LIMS4-201ENST00000413601 PLPP3O14495 311 aa12.99□□□□□ -0.33
LIMS4-201ENST00000413601 ABCD4O14678 606 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms