RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 TIMM22Q9Y584 194 aa5.7□□□□□ -1.5
USP40-202ENST00000409945 TRGV8A0A0C4DH27 118 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 HSPA4LO95757 839 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 CH25HO95992 272 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 ATP1B1P05026 303 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 CCDC159P0C7I6 412 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 BDKRB2P30411 391 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 ATP6V1E1P36543 226 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 ASMTP46597 345 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 UQCRFS1P47985 274 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 PNLIPRP2P54317 469 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 NCALDP61601 193 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 KCNJ2P63252 427 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 HMGCS1Q01581 520 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 C2orf80Q0P641 193 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 MAD2L1Q13257 205 aaPredicted RBP5.69□□□□□ -1.5
USP40-202ENST00000409945 ZNHIT3Q15649 155 aaPredicted RBP5.69□□□□□ -1.5
USP40-202ENST00000409945 PIGGQ5H8A4 983 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 WDR73Q6P4I2 378 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 CHERPQ8IWX8 916 aaKnown RBP5.69□□□□□ -1.5
USP40-202ENST00000409945 FAM9CQ8IZT9 166 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 C17orf47Q8NEP4 570 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 OR1J2Q8NGS2 313 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 ZNF721Q8TF20 911 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 TM4SF18Q96CE8 201 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 RADILQ96JH8 1075 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 PPP3R2Q96LZ3 170 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 GPR137Q96N19 417 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 RAB3IPQ96QF0 476 aaPredicted RBP5.69□□□□□ -1.5
USP40-202ENST00000409945 ACPTQ9BZG2 426 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 WWTR1Q9GZV5 400 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 CXorf21Q9HAI6 301 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 LRTM1Q9HBL6 345 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 C1orf109Q9NX04 203 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 TAS2R9Q9NYW1 312 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 MRTO4Q9UKD2 239 aaKnown RBP5.69□□□□□ -1.5
USP40-202ENST00000409945 EMCNQ9ULC0 261 aa5.69□□□□□ -1.5
USP40-202ENST00000409945 ASPDHA6ND91 283 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NPIPA5E9PKD4 350 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 PGRMC2O15173 223 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ACOX3O15254 700 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 PRKRAO75569 313 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 IGKV3-11P04433 115 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 IL3P08700 152 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 CNR1P21554 472 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 FEN1P39748 380 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 SOX3P41225 446 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 PDLIM4P50479 330 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SMSP52788 366 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 TMED1Q13445 227 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 RIPK1Q13546 671 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ATP6AP1LQ52LC2 224 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 TCHHL1Q5QJ38 904 aaPredicted RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 ARHGAP11AQ6P4F7 1023 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 TEX38Q6PEX7 206 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 RNF165Q6ZSG1 346 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NATD1Q8N6N6 113 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 OR5R1Q8NH85 324 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 C16orf78Q8WTQ4 265 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 EXOSC8Q96B26 276 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 SPACA9Q96E40 222 aaPredicted RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 TAAR6Q96RI8 345 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 KCNA7Q96RP8 456 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 GFI1Q99684 422 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NPAS2Q99743 824 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SIKE1Q9BRV8 207 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 EXO5Q9H790 373 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 C3orf14Q9HBI5 128 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 HHATLQ9HCP6 504 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SLC35C2Q9NQQ7 365 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SAR1AQ9NR31 198 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 C1RLQ9NZP8 487 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ZNF225Q9UK10 706 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NPIPA1Q9UND3 350 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NTNG1Q9Y2I2 539 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 FLNCQ14315 2725 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 LRRTM2O43300 516 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SPRY1O43609 319 aaPredicted RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 MGRN1O60291 552 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 CDC40O60508 579 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP40-202ENST00000409945 SLC19A2O60779 497 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 OR6B1O95007 311 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SNX4O95219 450 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 BPGMP07738 259 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 FGF4P08620 206 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 STSP08842 583 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NQO1P15559 274 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 BGNP21810 368 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 HPCAL1P37235 193 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 PCYT1AP49585 367 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 NR0B1P51843 470 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 PSMD4P55036 377 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 PPIAP62937 165 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 PMP22Q01453 160 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 FUT7Q11130 342 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 EBPQ15125 230 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 SF3B4Q15427 424 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP40-202ENST00000409945 SNCBQ16143 134 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ZNF324BQ6AW86 544 aaPredicted RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 CLEC6AQ6EIG7 209 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms