RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PXT1Q8NFP0 134 aa11.04□□□□□ -0.64
HMGB1-206ENST00000405805 NSMAFQ92636 917 aa11.04□□□□□ -0.64
HMGB1-206ENST00000405805 ZMAT3Q9HA38 289 aaKnown RBP11.04□□□□□ -0.64
HMGB1-206ENST00000405805 IL21RQ9HBE5 538 aa11.04□□□□□ -0.64
HMGB1-206ENST00000405805 CENPMQ9NSP4 180 aa11.04□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF443Q9Y2A4 671 aaPredicted RBP11.04□□□□□ -0.64
HMGB1-206ENST00000405805 PCYT1BQ9Y5K3 369 aaPredicted RBP11.04□□□□□ -0.64
HMGB1-206ENST00000405805 AGAP14A8MT82 685 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 D6RAR5 112 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SLC43A1O75387 559 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 KAT7O95251 611 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SOD1P00441 154 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 GTF2F2P13984 249 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 GNALP38405 381 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 S100A10P60903 97 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF705AQ6ZN79 300 aaPredicted RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 LIX1LQ8IVB5 337 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 OR52H1Q8NGJ2 320 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 OR10R2Q8NGX6 335 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SFT2D1Q8WV19 159 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SLC35A4Q96G79 324 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 FCRL1Q96LA6 429 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 TAPBPLQ9BX59 468 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 HRASLS2Q9NWW9 162 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SAGE1Q9NXZ1 904 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 WASF3Q9UPY6 502 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ADAM18Q9Y3Q7 739 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 HTTP42858 3142 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM129A0AVI4 362 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CXCL3P19876 107 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ITGB7P26010 798 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 RAB5CP51148 216 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 HTR4Q13639 388 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 GPR155Q7Z3F1 870 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 KIAA0907Q7Z7F0 614 aaPredicted RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF565Q8N9K5 539 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 PMM1Q92871 262 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 DERL3Q96Q80 235 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ABHD1Q96SE0 405 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 C1QTNF2Q9BXJ5 285 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 KCNIP3Q9Y2W7 256 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 BTBD17A6NE02 478 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CDC42EP2O14613 210 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CASC3O15234 703 aaKnown RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CLEC3AO75596 197 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CSTAP01040 98 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 OR8G3PP0DMU2 310 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 MAKP20794 623 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 RBM34P42696 430 aaKnown RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 DOC2BQ14184 412 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CST6Q15828 149 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 RNF212Q495C1 297 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 HLA-DQA1Q5Y7H0 255 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 HBMQ6B0K9 141 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 COMTD1Q86VU5 262 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 CBLN2Q8IUK8 224 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 DEFB119Q8N690 84 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 POMGNT2Q8NAT1 580 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 RBM14Q96PK6 669 aaKnown RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 NMNAT3Q96T66 252 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 ELL3Q9HB65 397 aaPredicted RBP11.03□□□□□ -0.64
HMGB1-206ENST00000405805 SLC25A19Q9HC21 320 aa11.03□□□□□ -0.64
HMGB1-206ENST00000405805 TMEM200CA6NKL6 621 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 SGK494L7N484 410 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 HSPA12AO43301 675 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 F13BP05160 661 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 SERPINF1P36955 418 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 FXYD6P3P58550 94 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 FOXK2Q01167 660 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 KIAA0141Q14154 515 aaPredicted RBP11.02□□□□□ -0.64
HMGB1-206ENST00000405805 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.02□□□□□ -0.64
HMGB1-206ENST00000405805 AMZ1Q400G9 498 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 ABHD17CQ6PCB6 329 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 SPPL3Q8TCT6 385 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 TSSK2Q96PF2 358 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 RSRP1Q9BUV0 290 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 NT5DC2Q9H857 520 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 SIRT3Q9NTG7 399 aaPredicted RBP11.02□□□□□ -0.64
HMGB1-206ENST00000405805 C20orf141Q9NUB4 165 aa11.02□□□□□ -0.64
HMGB1-206ENST00000405805 TRAV18A0A075B6X5 111 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 SEMA7AO75326 666 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ITGA10O75578 1167 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 SLC25A12O75746 678 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 EGFP01133 1207 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 CPT2P23786 658 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 VASPP50552 380 aaPredicted RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 UBE2IP63279 158 aaKnown RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF273Q14593 569 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 NKPD1Q17RQ9 610 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 LEG1Q6P5S2 330 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 RDH10Q8IZV5 341 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 ZNF784Q8NCA9 323 aaPredicted RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 DTD1Q8TEA8 209 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 TEAD3Q99594 435 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 JAM3Q9BX67 310 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 HCAR1Q9BXC0 346 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PELI2Q9HAT8 420 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 PNO1Q9NRX1 252 aaKnown RBP11.02□□□□□ -0.65
HMGB1-206ENST00000405805 FBXO34Q9NWN3 711 aa11.02□□□□□ -0.65
HMGB1-206ENST00000405805 TRABD2BA6NFA1 517 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms