RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 HTR3EA5X5Y0 456 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PRR23D1E9PI22 279 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 KLRC4-KLRK1H3BQV0 150 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 H7C1C5 153 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SULT2B1O00204 365 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ETV2O00321 342 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 IFNGP01579 166 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 STSP08842 583 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 HTR1AP08908 422 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CELA3AP09093 270 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PRR23D2P0DMB1 279 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 CLUP10909 449 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 IMPDH2P12268 514 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ACVR2AP27037 513 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ADH6P28332 368 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SRD5A2P31213 254 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MAP2K4P45985 399 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ID4P47928 161 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MEOX1P50221 254 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CDH11P55287 796 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 LCN6P62502 163 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 RPS4XP62701 263 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 SLC35A2P78381 396 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ITGADQ13349 1161 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SLC25A53Q5H9E4 307 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ARHGAP11AQ6P4F7 1023 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ZNF773Q6PK81 442 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 C5orf46Q6UWT4 87 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SHFQ7M4L6 423 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 JAZF1Q86VZ6 243 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 FAM26EQ8N5C1 309 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 HAS2Q92819 552 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ZNF566Q969W8 418 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 HCAR1Q9BXC0 346 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TTTY12Q9BZ98 90 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 FN3KQ9H479 309 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 VCX3AQ9NNX9 186 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CMC2Q9NRP2 79 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PLSCR2Q9NRY7 297 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TAS2R5Q9NYW4 299 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TNFRSF10DQ9UBN6 386 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PSORS1C1Q9UIG5 152 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 KLF13Q9Y2Y9 288 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 RPL36Q9Y3U8 105 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 IGHV3-15A0A0B4J1V0 119 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SH3D21A4FU49 640 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CCDC160A6NGH7 325 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 LIPT2A6NK58 231 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SNTNA6NMZ2 147 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 FAM171A2A8MVW0 826 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PLPP3O14495 311 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 EIF1AYO14602 144 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 IMPA2O14732 288 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TNFSF11O14788 317 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 RRP8O43159 456 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 PRODHO43272 600 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 NME2P1O60361 137 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 IGF2P01344 180 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MT-ND2P03891 347 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TFAP2AP05549 437 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CD14P08571 375 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 HLA-DOBP13765 273 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PAICSP22234 425 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 NME2P22392 152 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 UQCRC1P31930 480 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 GRK5P34947 590 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 RPL5P46777 297 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 CD97P48960 835 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 DIO1P49895 249 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TNFSF10P50591 281 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MAP2K6P52564 334 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 CLDN20P56880 219 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SOX8P57073 446 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PPIAP62937 165 aaKnown RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 CSNK2BP67870 215 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 PMP22Q01453 160 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SRYQ05066 204 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ZNF91Q05481 1191 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.34□□□□□ -1.882e-6■□□□□ 8.9
RTN4-208ENST00000404909 PUDPQ08623 228 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 APOFQ13790 326 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SGCBQ16585 318 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MEDAGQ5VYS4 303 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TMEM225Q6GV28 225 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 LEG1Q6P5S2 330 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 H1FNTQ75WM6 255 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 SPARTQ8N0X7 666 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TMEM99Q8N816 258 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TMEM178AQ8NBL3 297 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 SLC37A3Q8NCC5 494 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MDS2Q8NDY4 140 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MFSD8Q8NHS3 518 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 ZPLD1Q8TCW7 415 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 LIPHQ8WWY8 451 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 MYDGFQ969H8 173 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 RNFT2Q96EX2 444 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 NDEL1Q9GZM8 345 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 TSPAN10Q9H1Z9 355 aaPredicted RBP3.34□□□□□ -1.88
RTN4-208ENST00000404909 DUSP21Q9H596 190 aa3.34□□□□□ -1.88
RTN4-208ENST00000404909 NRIP3Q9NQ35 241 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms