RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 A0A0B4J293 547 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 HMX3A6NHT5 357 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 GMFGO60234 142 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 TSPAN9O75954 239 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 PNMTP11086 282 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 AQP2P41181 271 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 EVX1P49640 407 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 ZNF117Q03924 483 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.71□□□□□ -0.37
SNCA-204ENST00000394989 FAM122BQ7Z309 247 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 PRSS42Q7Z5A4 293 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 PXKQ7Z7A4 578 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 GPR135Q8IZ08 494 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 GDPD1Q8N9F7 314 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 LRRC75AQ8NAA5 344 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 ABHD4Q8TB40 342 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 LIPHQ8WWY8 451 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 FRMD6Q96NE9 622 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 TMEM43Q9BTV4 400 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 MMP25Q9NPA2 562 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 FGF21Q9NSA1 209 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 RABL2AQ9UBK7 228 aaPredicted RBP12.71□□□□□ -0.37
SNCA-204ENST00000394989 CTSFQ9UBX1 484 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 BLOC1S5-TXNDC5H3BN57 136 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 I3L521 148 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 SELENOFO60613 162 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 SPI1P17947 270 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 CXCL12P48061 93 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 FAPQ12884 760 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 OR8H3Q8N146 312 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 OIT3Q8WWZ8 545 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 GHSRQ92847 366 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 KTI12Q96EK9 354 aaPredicted RBP12.71□□□□□ -0.37
SNCA-204ENST00000394989 PELI1Q96FA3 418 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 CNN2Q99439 309 aaKnown RBP12.71□□□□□ -0.37
SNCA-204ENST00000394989 NLKQ9UBE8 527 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 COPS3Q9UNS2 423 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 HIF3AQ9Y2N7 669 aa12.71□□□□□ -0.37
SNCA-204ENST00000394989 A0A1B0GX78 115 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 IGF2P01344 180 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 ASAH2BP0C7U1 165 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 CD53P19397 219 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 F8A1P23610 371 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 CDKN2AP42771 156 aaKnown RBP12.71□□□□□ -0.38
SNCA-204ENST00000394989 DIO1P49895 249 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 OR10A3P58181 314 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 PRPS1P60891 318 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 TOMM34Q15785 309 aaPredicted RBP12.71□□□□□ -0.38
SNCA-204ENST00000394989 FAM205BPQ63HN1 556 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 WDR74Q6RFH5 385 aaPredicted RBP12.71□□□□□ -0.38
SNCA-204ENST00000394989 LANCL3Q6ZV70 420 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 OR14A16Q8NHC5 309 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 KIAA1143Q96AT1 154 aaPredicted RBP12.71□□□□□ -0.38
SNCA-204ENST00000394989 PHF21AQ96BD5 680 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 Q96M85 177 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 MESP1Q9BRJ9 268 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 B3GAT2Q9NPZ5 323 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 SLC22A11Q9NSA0 550 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 ACOXLQ9NUZ1 547 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 MKL2Q9ULH7 1088 aa12.71□□□□□ -0.38
SNCA-204ENST00000394989 CACNA1EQ15878 2313 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 TEX13CA0A0J9YWL9 993 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 TSPAN2O60636 221 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 OR2T7P0C7T2 308 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 THBS2P35442 1172 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 NR0B1P51843 470 aaKnown RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 TAS2R43P59537 309 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 SCN1BQ07699 218 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ASAH1Q13510 395 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ARHGAP40Q5TG30 622 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ZNF574Q6ZN55 896 aaPredicted RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 SHISA6Q6ZSJ9 500 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 POMGNT2Q8NAT1 580 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 OR2T27Q8NH04 317 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 RNF170Q96K19 258 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 CCNL2Q96S94 520 aaPredicted RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 DPYSL5Q9BPU6 564 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 WWTR1Q9GZV5 400 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ZNF346Q9UL40 294 aaKnown RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 PLA2G10O15496 165 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 SERPINI2O75830 405 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 CFL1P23528 166 aaKnown RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 TACR3P29371 465 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 KIR2DL3P43628 341 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 TATDN3Q17R31 274 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ISXQ2M1V0 245 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 CDONQ4KMG0 1287 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 LINC01590Q5TEZ4 76 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 TSSK4Q6SA08 328 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 PLET1Q6UQ28 207 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 COX15Q7KZN9 410 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 CEACAM19Q7Z692 300 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 GLRX5Q86SX6 157 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 MARCH3Q86UD3 253 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 SLC35F2Q8IXU6 374 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 OR4M1Q8NGD0 313 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 CCDC74AQ96AQ1 378 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ADAM19Q9H013 955 aa12.7□□□□□ -0.38
SNCA-204ENST00000394989 ZNF768Q9H5H4 540 aaKnown RBP12.7□□□□□ -0.38
SNCA-204ENST00000394989 CDCP1Q9H5V8 836 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms