RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 KIR2DS5A0A0G2JLQ3 304 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 A0A0G2JNG1 304 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 TMEM82A0PJX8 343 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 KIR2DS3K7RE56 304 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 UBBP0CG47 229 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 UBCP0CG48 685 aaKnown RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 CCR6P51684 374 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 TAS2R30P59541 319 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 KIR2DS5Q14953 304 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 MANEAQ5SRI9 462 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 DCAF12Q5T6F0 453 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 TANGO2Q6ICL3 276 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF705AQ6ZN79 300 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 PM20D2Q8IYS1 436 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 PLPP7Q8NBV4 271 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 MTCH1Q9NZJ7 389 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NXT1Q9UKK6 140 aaKnown RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 DNAJB6O75190 326 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NXPH2O95156 264 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 CER1O95813 267 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 AOAHP28039 575 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 ARL16Q0P5N6 197 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 MPEG1Q2M385 716 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NLRP8Q86W28 1048 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 PITHD1Q9GZP4 211 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SMCO4Q9NRQ5 59 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NFAT5O94916 1531 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 GPR75O95800 540 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 HOXD11P31277 338 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 DAPP51397 102 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SLC14A2Q15849 920 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 RASD2Q96D21 266 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SRPK3Q9UPE1 567 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NUMBLQ9Y6R0 609 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 COL2A1P02458 1487 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 TSTD3H0UI37 97 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 TNFRSF4P43489 277 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 MZT1Q08AG7 82 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 HSF5Q4G112 596 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 PLAC9Q5JTB6 97 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SYT13Q7L8C5 426 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 OR2T27Q8NH04 317 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 FGGYQ96C11 551 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 LRFN5Q96NI6 719 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 NKX3-1Q99801 234 aaPredicted RBP12.72□□□□□ -0.37
COL4A1-201ENST00000375820 ALG12Q9BV10 488 aa12.72□□□□□ -0.37
COL4A1-201ENST00000375820 SELENOFO60613 162 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 ITGAMP11215 1152 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 PRLHRP49683 370 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 PCBD1P61457 104 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF91Q05481 1191 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 CBLL1Q75N03 491 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 LRRC28Q86X40 367 aaPredicted RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 CLSTN3Q9BQT9 956 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 UTP23Q9BRU9 249 aaKnown RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 NTMT1Q9BV86 223 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 ERVMER34-1Q9H9K5 563 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 LUZP4Q9P127 313 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 URGCP-MRPS24S4R325 110 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 AQP9O43315 295 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SNAPINO95295 136 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SIX6O95475 246 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 EIF4EP06730 217 aaKnown RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MMP2P08253 660 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 TACR1P25103 407 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MSMO1Q15800 293 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF74Q16587 644 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 VRK3Q8IV63 474 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 OR51D1Q8NGF3 324 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 GINS3Q9BRX5 216 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SLC22A23A1A5C7 686 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 E9PI62 339 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 TOR1AO14656 332 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 PRAF2O60831 178 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MYOGP15173 224 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 FOLR1P15328 257 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 BCKDHBP21953 392 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SSR4P51571 173 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MED25Q71SY5 747 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 TIMM29Q9BSF4 260 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MCOLN1Q9GZU1 580 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 C1orf198Q9H425 327 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 PURGQ9UJV8 347 aaKnown RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 ZNF891A8MT65 544 aaPredicted RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 GPR137BO60478 399 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 UTS2O95399 124 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 GABRA4P48169 554 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SRP9P49458 86 aaKnown RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 P2RX3P56373 397 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 RBPJQ06330 500 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 GALEQ14376 348 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 OR8G2PQ6IF36 304 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 MRPL10Q7Z7H8 261 aaKnown RBP12.71□□□□□ -0.37
COL4A1-201ENST00000375820 FRMD1Q8N878 549 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 OR5K2Q8NHB8 316 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 DUSP23Q9BVJ7 150 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 SLC19A3Q9BZV2 496 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 TREX1Q9NSU2 369 aa12.71□□□□□ -0.37
COL4A1-201ENST00000375820 FAM208AQ9UK61 1670 aaKnown RBP12.71□□□□□ -0.38
COL4A1-201ENST00000375820 ZC3H12DA2A288 527 aaKnown RBP12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms