RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZNF440Q8IYI8 595 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 ZNF563Q8TA94 476 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 KTI12Q96EK9 354 aaPredicted RBP17.64■□□□□ 0.42
COL9A3-201ENST00000343916 ALG12Q9BV10 488 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 SLC19A3Q9BZV2 496 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 MMP25Q9NPA2 562 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 POU3F3P20264 500 aaPredicted RBP17.64■□□□□ 0.41
COL9A3-201ENST00000343916 RBMS1P29558 406 aaKnown RBP17.64■□□□□ 0.41
COL9A3-201ENST00000343916 CTXN1P60606 82 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 CFHR1Q03591 330 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 LINC01590Q5TEZ4 76 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 C7orf57Q8NEG2 295 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 TRIM63Q969Q1 353 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 RELTQ969Z4 430 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 RFT1Q96AA3 541 aa17.64■□□□□ 0.41
COL9A3-201ENST00000343916 PELOQ9BRX2 385 aaKnown RBP17.64■□□□□ 0.41
COL9A3-201ENST00000343916 TNFRSF10AO00220 468 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 DCTN6O00399 190 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 GALNSP34059 522 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 RORAP35398 523 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 CLDN20P56880 219 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 FOXL2P58012 376 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 GPR176Q14439 515 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 ALG10Q5BKT4 473 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 CEP78Q5JTW2 689 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 LYPD8Q6UX82 237 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 FAM122BQ7Z309 247 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 LSM14AQ8ND56 463 aaKnown RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 ZNF721Q8TF20 911 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 LCORQ96JN0 433 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 SLC46A1Q96NT5 459 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 CACNA1CQ13936 2221 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 ERVH48-1M5A8F1 160 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 WISP1O95388 367 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 DDAH2O95865 285 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 IGKV3-11P04433 115 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 PNMTP11086 282 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 EPXP11678 715 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 TACR3P29371 465 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 ADH7P40394 386 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 EFR3AQ14156 821 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 TOMM34Q15785 309 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 RPL22L1Q6P5R6 122 aaKnown RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 KRT74Q7RTS7 529 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 JAZF1Q86VZ6 243 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 YIPF7Q8N8F6 280 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 TEX19Q8NA77 164 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 OR1L3Q8NH93 324 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 HSD17B8Q92506 261 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 ADIPOR1Q96A54 375 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 GPX7Q96SL4 187 aaPredicted RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 LPAR4Q99677 370 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 BRD7Q9NPI1 651 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 EPHA6Q9UF33 1036 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 HIF3AQ9Y2N7 669 aa17.63■□□□□ 0.41
COL9A3-201ENST00000343916 MRPS7Q9Y2R9 242 aaKnown RBP17.63■□□□□ 0.41
COL9A3-201ENST00000343916 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 SERPINA3P01011 423 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 CAPZA2P47755 286 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 ARL4DP49703 201 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 NXPH1P58417 271 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 NANOS3P60323 173 aaKnown RBP17.62■□□□□ 0.41
COL9A3-201ENST00000343916 GPLD1P80108 840 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 C1orf189Q5VU69 101 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 NUDT9Q9BW91 350 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 ABCG5Q9H222 651 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 SRA1Q9HD15 236 aaKnown RBP17.62■□□□□ 0.41
COL9A3-201ENST00000343916 TP53BP1Q12888 1972 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-201ENST00000343916 IGKV3D-11A0A0A0MRZ8 115 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 ACOD1A6NK06 481 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 FLRT2O43155 660 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 HCRTR2O43614 444 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 GLCEO94923 617 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 CD14P08571 375 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 GNG2P59768 71 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 ZNF117Q03924 483 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 SMAD4Q13485 552 aaKnown RBP17.62■□□□□ 0.41
COL9A3-201ENST00000343916 SLC35D3Q5M8T2 416 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 OGFOD3Q6PK18 319 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 LRRC75AQ8NAA5 344 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 ELF4Q99607 663 aaPredicted RBP17.62■□□□□ 0.41
COL9A3-201ENST00000343916 MARVELD1Q9BSK0 173 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 NPFFR2Q9Y5X5 522 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 PCNX3Q9H6A9 2034 aa17.62■□□□□ 0.41
COL9A3-201ENST00000343916 TRAV1-2A0A0B4J238 106 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 FRG2CA6NGY1 282 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 KHNYNO15037 678 aaKnown RBP17.61■□□□□ 0.41
COL9A3-201ENST00000343916 RPP14O95059 124 aaKnown RBP17.61■□□□□ 0.41
COL9A3-201ENST00000343916 UCHL1P09936 223 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 ASAH2BP0C7U1 165 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 FOLR1P15328 257 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 NR0B1P51843 470 aaKnown RBP17.61■□□□□ 0.41
COL9A3-201ENST00000343916 HSD11B2P80365 405 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 RPL18Q07020 188 aaKnown RBP17.61■□□□□ 0.41
COL9A3-201ENST00000343916 NSDHLQ15738 373 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 C9orf40Q8IXQ3 194 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 IRF2BPLQ9H1B7 796 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 NOX4Q9NPH5 578 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 KLHDC2Q9Y2U9 406 aa17.61■□□□□ 0.41
COL9A3-201ENST00000343916 IGHV1OR21-1A0A087WYE8 117 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms