RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 DDIT4LQ96D03 193 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ARL5BQ96KC2 179 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ARHGAP9Q9BRR9 750 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 DCSTAMPQ9H295 470 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 PTGES2Q9H7Z7 377 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 WDR70Q9NW82 654 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 HAO2Q9NYQ3 351 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 G3V3Y1 287 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 H3BML4 177 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ETV2O00321 342 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 TERTO14746 1132 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 RNF13O43567 381 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 PLGP00747 810 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 TFPIP10646 304 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 CPEP16870 476 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SPI1P17947 270 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 IL11P20809 199 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 POU4F2Q12837 409 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ATP1A4Q13733 1029 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 MESTQ5EB52 335 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF468Q5VIY5 522 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 TMEM81Q6P7N7 255 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 FADS6Q8N9I5 356 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF485Q8NCK3 441 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 OR52N1Q8NH53 320 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF417Q8TAU3 575 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 TBC1D15Q8TC07 691 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 DYNC2LI1Q8TCX1 351 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 PAQR8Q8TEZ7 354 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SMAP2Q8WU79 429 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SPRYD4Q8WW59 207 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SMPDL3BQ92485 455 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 C1GALT1C1Q96EU7 318 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 FRMD6Q96NE9 622 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF587Q96SQ5 575 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 DDOQ99489 341 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ALG8Q9BVK2 526 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SLC24A3Q9HC58 644 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 EXOSC4Q9NPD3 245 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 RPRD1BQ9NQG5 326 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ANKRD10Q9NXR5 420 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 H7C1C5 153 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF208O43345 1280 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 CLPXO76031 633 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 OR6A2O95222 327 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 TXNDC12O95881 172 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SERPINA7P05543 415 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 PSMA1P25786 263 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 GTF2E2P29084 291 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 LCN6P62502 163 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 PON3Q15166 354 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 OR7A5Q15622 319 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SLC25A53Q5H9E4 307 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 EMC4Q5J8M3 183 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 SLC22A10Q63ZE4 541 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF322Q6U7Q0 402 aaPredicted RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 USP43Q70EL4 1123 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 RAB43Q86YS6 212 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZFP41Q8N8Y5 198 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 OR5M1Q8NGP8 315 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 OR6K6Q8NGW6 343 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 POC1BQ8TC44 478 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNRF4Q8WWF5 429 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 PRRX2Q99811 253 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 LRFN3Q9BTN0 628 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ANGPTL4Q9BY76 406 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 NMNAT2Q9BZQ4 307 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 INIPQ9NRY2 104 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF346Q9UL40 294 aaKnown RBP12.09□□□□□ -0.47
HMGB1-202ENST00000339872 KNTC1P50748 2209 aa12.09□□□□□ -0.47
HMGB1-202ENST00000339872 FTCDNL1E5RQL4 147 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 GPX5O75715 221 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 LALBAP00709 142 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 GABREP78334 506 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 DGUOKQ16854 277 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 GPR139Q6DWJ6 353 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 TMPRSS11AQ6ZMR5 421 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ADCK1Q86TW2 530 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 PLCZ1Q86YW0 608 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 KBTBD8Q8NFY9 601 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 UFD1Q92890 307 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 CNN2Q99439 309 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ISG20L2Q9H9L3 353 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 SH2D2AQ9NP31 389 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ISYNA1Q9NPH2 558 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 INPP5EQ9NRR6 644 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 STUB1Q9UNE7 303 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 CAB39Q9Y376 341 aaPredicted RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 FREM2Q5SZK8 3169 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 PLPP3O14495 311 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 AKAP8O43823 692 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 EFNA2O43921 213 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 DXOO77932 396 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 NAA10P41227 235 aaPredicted RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 NBL1P41271 181 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 LIMK1P53667 647 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ACTC1P68032 377 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ACTA1P68133 377 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 FOXK1P85037 733 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 GALEQ14376 348 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms