RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 WISP1O95388 367 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 BGLAPP02818 100 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 RAB40ALP0C0E4 278 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 UQCRC1P31930 480 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TGFBR1P36897 503 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 EIF3IQ13347 325 aaKnown RBP12.93□□□□□ -0.34
C9orf3-202ENST00000297979 NDUFAF7Q7L592 441 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 LHFPL3Q86UP9 236 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 SLC51BQ86UW2 128 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 ADGRG3Q86Y34 549 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 OR9Q1Q8NGQ5 310 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 DYNC2LI1Q8TCX1 351 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TEAD3Q99594 435 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 CHCHD6Q9BRQ6 235 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TOR4AQ9NXH8 423 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 EMC3Q9P0I2 261 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TCFL5Q9UL49 500 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 SLC6A5Q9Y345 797 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 PCNX3Q9H6A9 2034 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 J3QRE1 110 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TMEM127O75204 238 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 HIST1H2ABP04908 130 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 CLUP10909 449 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TCN2P20062 427 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 ERVK-25P63136 954 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 ALG10Q5BKT4 473 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 HIST3H2AQ7L7L0 130 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 LRRC75AQ8NAA5 344 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 HIST1H2ACQ93077 130 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 SGK3Q96BR1 496 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 WNT5BQ9H1J7 359 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 GHITMQ9H3K2 345 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 NDUFB11Q9NX14 153 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 ERVK13-1Q9NX77 482 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 MED11Q9P086 117 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 FBXL4Q9UKA2 621 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 WIF1Q9Y5W5 379 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 PCP4L1A6NKN8 68 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 A8MVM7 634 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 B4DXG7 233 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 APEHP13798 732 aaKnown RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 PRKCAP17252 672 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 UGT2B10P36537 528 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 PTGDSP41222 190 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 RPS18P62269 152 aaKnown RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 SF3B4Q15427 424 aaKnown RBP eCLIP12.92□□□□□ -0.342e-8■■□□□ 13.7
C9orf3-202ENST00000297979 ZNF791Q3KP31 576 aaPredicted RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 DHRS13Q6UX07 377 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 USP43Q70EL4 1123 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 KLHL36Q8N4N3 616 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 GATAD2BQ8WXI9 593 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF649Q9BS31 505 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 SPRY4Q9C004 299 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 DCSTAMPQ9H295 470 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 CRLF2Q9HC73 371 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF160Q9HCG1 818 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 ISYNA1Q9NPH2 558 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 FAM47E-STBD1D6RA91 191 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 NPIPB7O75200 414 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 MT-ATP6P00846 226 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 CD14P08571 375 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 TSPAN19P0C672 248 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 CPEP16870 476 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 MSX1P28360 303 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 MRPS15P82914 257 aaKnown RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 RPL18Q07020 188 aaKnown RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 DBPQ10586 325 aaPredicted RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 CSRP2Q16527 193 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 DGUOKQ16854 277 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 TMEM164Q5U3C3 297 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 C1QL3Q5VWW1 255 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 C5orf46Q6UWT4 87 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 PHC2Q8IXK0 858 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 ACBD7Q8N6N7 88 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 KBTBD8Q8NFY9 601 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 OR52N1Q8NH53 320 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 STK35Q8TDR2 534 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 RASD2Q96D21 266 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 PTDSS2Q9BVG9 487 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 HAO2Q9NYQ3 351 aa12.92□□□□□ -0.34
C9orf3-202ENST00000297979 SPIN1Q9Y657 262 aaPredicted RBP12.92□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF318Q5VUA4 2279 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 IGLV3-32A0A0A0MS00 114 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 A0A1W2PNU3 283 aaPredicted RBP12.91□□□□□ -0.34
C9orf3-202ENST00000297979 ANKRD34BA5PLL1 514 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 SNX4O95219 450 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 GYPBP06028 91 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 CD79BP40259 229 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 CTXN1P60606 82 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 NDUFA5Q16718 116 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 FAM69AQ5T7M9 428 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 C1orf140Q5VVS0 124 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 LIPKQ5VXJ0 399 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 PPP1R32Q7Z5V6 425 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 ZBTB46Q86UZ6 589 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF485Q8NCK3 441 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 ARHGAP9Q9BRR9 750 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 SEC14L4Q9UDX3 406 aa12.91□□□□□ -0.34
C9orf3-202ENST00000297979 YARS2Q9Y2Z4 477 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms