RNA–Protein interactions for RNA: ENST00000289547.8

NPC1L1-201, Transcript of NPC1 like intracellular cholesterol transporter 1, humanhuman

TSL 1 (best) BASIC

Gene NPC1L1, Length 5,048 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1-201ENST00000289547 LRFN1Q9P244 771 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 C5AR2Q9P296 337 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 LSM5Q9Y4Y9 91 aaKnown RBP10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 GABRR3A8MPY1 467 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 MAGEB1P43366 347 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 ALG10Q5BKT4 473 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 ZMAT1Q5H9K5 638 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 TMEM88Q6PEY1 159 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 MFSD9Q8NBP5 474 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 PHOSPHO1Q8TCT1 267 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 C14orf79Q96F83 325 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 MRGPRX3Q96LB0 322 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 RHNO1Q9BSD3 238 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 DPH1Q9BZG8 443 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC5A7Q9GZV3 580 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 SPNS1Q9H2V7 528 aa10.55□□□□□ -0.72
NPC1L1-201ENST00000289547 CIB4A0PJX0 185 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TSPAN11A1L157 253 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 FAM227AF5H4B4 570 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SIGLEC6O43699 453 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 CSF3P09919 207 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 ZNF888P0CJ79 500 aaPredicted RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 COL9A1P20849 921 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 PSMB10P40306 273 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 XCR1P46094 333 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SRP9P49458 86 aaKnown RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC5A12Q1EHB4 618 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 FAM69BQ5VUD6 431 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 LRFN4Q6PJG9 635 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 DEFB124Q8NES8 71 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 OR10R2Q8NGX6 335 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 ZNF480Q8WV37 535 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 PNPLA2Q96AD5 504 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC25A46Q96AG3 418 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 C4orf36Q96KX1 117 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SMIM3Q9BZL3 60 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TUBB1Q9H4B7 451 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 PRELID3BQ9Y3B1 194 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 LOXL2Q9Y4K0 774 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TMEM14AQ9Y6G1 99 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TRABD2BA6NFA1 517 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TNFSF14O43557 240 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 PIAS2O75928 621 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 PVRP15151 417 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC1A3P43003 542 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 NDUFA6P56556 154 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 MCCD1P59942 119 aaPredicted RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 DNM1P34Q6PK57 102 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TMUB2Q71RG4 321 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TECPR1Q7Z6L1 1165 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SUMF2Q8NBJ7 301 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 CDCP1Q9H5V8 836 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC23A1Q9UHI7 598 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 ATG4BQ9Y4P1 393 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 V9GY05 133 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TRBV4-1A0A0J9YWV2 114 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 IFNA5P01569 189 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 HLA-AP01891 365 aaKnown RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TRA2AQ13595 282 aaKnown RBP eCLIP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TRIP6Q15654 476 aaKnown RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 UNQ6126/PRO20091Q6UXV3 157 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 BHLHA9Q7RTU4 235 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 TCTE3Q8IZS6 198 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 MFSD4AQ8N468 514 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 CLRN3Q8NCR9 226 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 OR5AK2Q8NH90 309 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 FAM46BQ96A09 425 aa10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 NDRG4Q9ULP0 352 aaKnown RBP10.54□□□□□ -0.72
NPC1L1-201ENST00000289547 A0A0B4J2A0 478 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 RDH16O75452 317 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 HOXC4P09017 264 aaPredicted RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 SFXN4Q6P4A7 337 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 TEX261Q6UWH6 196 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 TMEM107Q6UX40 140 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 NAXEQ8NCW5 288 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 SLC41A3Q96GZ6 507 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 DOK1Q99704 481 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 SHPKQ9UHJ6 478 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 PUS1Q9Y606 427 aaKnown RBP eCLIP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 U3KQ87 197 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 GAPDHSO14556 408 aaPredicted RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 GPR85P60893 370 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 RBMS2Q15434 407 aaKnown RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 XAF1Q6GPH4 301 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 DPPA2Q7Z7J5 298 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 GLCCI1Q86VQ1 547 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 OR1M1Q8NGA1 313 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 NUDT8Q8WV74 236 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 ARID1AO14497 2285 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 RNASET2O00584 256 aaKnown RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 E2F3O00716 465 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 PPP1R3DO95685 299 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 GAAP10253 952 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 EPHA8P29322 1005 aaPredicted RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 NXPH1P58417 271 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 LRRC56Q8IYG6 542 aaPredicted RBP10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 NTMT1Q9BV86 223 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 RNF215Q9Y6U7 377 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 FXYD1O00168 92 aa10.53□□□□□ -0.72
NPC1L1-201ENST00000289547 KNG1P01042 644 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms