RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CD300AQ9UGN4 299 aa13.47□□□□□ -0.25
LIG1-219ENST00000600055 NDRG3Q9UGV2 375 aa13.47□□□□□ -0.25
LIG1-219ENST00000600055 SNX13Q9Y5W8 968 aa13.47□□□□□ -0.25
LIG1-219ENST00000600055 A6NNC1 897 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 B2RBV5 119 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 OR2T1O43869 369 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 FZD7O75084 574 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 MRPL33O75394 65 aaKnown RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 T-ENOLP0DO92 83 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 FUT4P22083 530 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 GTF2E2P29084 291 aaKnown RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 YAP1P46937 504 aaKnown RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 TAS2R41P59536 307 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 DAZAP2Q15038 168 aaPredicted RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 C16orf89Q6UX73 402 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 CASP12Q6UXS9 341 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 RINLQ6ZS11 566 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 TMEM200AQ86VY9 491 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 NKAIN4Q8IVV8 208 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 C10orf53Q8N6V4 93 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 APH1AQ96BI3 265 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 HSH2DQ96JZ2 352 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 DACH2Q96NX9 599 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 EPYCQ99645 322 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 MED18Q9BUE0 208 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 SF3B5Q9BWJ5 86 aaKnown RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 AMBRA1Q9C0C7 1298 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 C6orf203Q9P0P8 240 aaPredicted RBP13.46□□□□□ -0.25
LIG1-219ENST00000600055 RIMS3Q9UJD0 308 aa13.46□□□□□ -0.25
LIG1-219ENST00000600055 CACNA1DQ01668 2161 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 DCHS2Q6V1P9 2916 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 J3KTA2 159 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 KPNA4O00629 521 aaPredicted RBP13.45□□□□□ -0.26
LIG1-219ENST00000600055 CTAG2O75638 210 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 OR5F1O95221 314 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 THBDP07204 575 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 HSD17B1P14061 328 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 FOXG1P55316 489 aaPredicted RBP13.45□□□□□ -0.26
LIG1-219ENST00000600055 SAMD4BQ5PRF9 694 aaKnown RBP13.45□□□□□ -0.26
LIG1-219ENST00000600055 TTC33Q6PID6 262 aaPredicted RBP13.45□□□□□ -0.26
LIG1-219ENST00000600055 Q6ZT83 130 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 CREB3L2Q70SY1 520 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 FKBP9P1Q75LS8 142 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 EPHX4Q8IUS5 362 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 UBE2J2Q8N2K1 259 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 OR6S1Q8NH40 331 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 TMEM255BQ8WV15 326 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 LURAP1Q96LR2 239 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 ZNF426Q9BUY5 554 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 ACTR6Q9GZN1 396 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 B3GAT1Q9P2W7 334 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 A4GNTQ9UNA3 340 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 RASD1Q9Y272 281 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 GPR52Q9Y2T5 361 aa13.45□□□□□ -0.26
LIG1-219ENST00000600055 FAM221AA4D161 298 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 MS4A18H0YCH9 400 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 LYZL6O75951 148 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 HPRP00739 348 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 PSMB1P20618 241 aaKnown RBP13.44□□□□□ -0.26
LIG1-219ENST00000600055 IGHV1-2P23083 117 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 MNAT1P51948 309 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 POU4F3Q15319 338 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 MS4A18Q3C1V0 323 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 IFI44LQ53G44 452 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 SFRP5Q5T4F7 317 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 FBXW9Q5XUX1 488 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 H1FNTQ75WM6 255 aaPredicted RBP13.44□□□□□ -0.26
LIG1-219ENST00000600055 AAED1Q7RTV5 226 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 FAM86B1Q8N7N1 296 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 PFN4Q8NHR9 129 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 GEMIN6Q8WXD5 167 aaKnown RBP13.44□□□□□ -0.26
LIG1-219ENST00000600055 TMEM45BQ96B21 275 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 S100PBPQ96BU1 408 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 MPP4Q96JB8 637 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 POLR2J2Q9GZM3 115 aaKnown RBP13.44□□□□□ -0.26
LIG1-219ENST00000600055 POLR2J3Q9H1A7 115 aaKnown RBP13.44□□□□□ -0.26
LIG1-219ENST00000600055 FANCFQ9NPI8 374 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 RASSF1Q9NS23 344 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 NDE1Q9NXR1 346 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 RHCGQ9UBD6 479 aa13.44□□□□□ -0.26
LIG1-219ENST00000600055 FFAR1O14842 300 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 CASKO14936 926 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 SIAH2O43255 324 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 VAMP5O95183 116 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 CH25HO95992 272 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 IFNW1P05000 195 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 CALB2P22676 271 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 IL32P24001 234 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 SELENOPP49908 381 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 UGT2B15P54855 530 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 IL1RL1Q01638 556 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 LGALS3BPQ08380 585 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 FAPQ12884 760 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 ITGADQ13349 1161 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 PMS2P3Q13401 168 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 P2RY6Q15077 328 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 ZNF74Q16587 644 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 FXNQ16595 210 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 TSPO2Q5TGU0 170 aa13.43□□□□□ -0.26
LIG1-219ENST00000600055 BHLHA15Q7RTS1 189 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms